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Featured Publications Citing Applied Biomics' Proteomics Services
(Over 200 Publications in Recent 5 Years)

 

 

 


No.


Proteomics Publications


Sample Type

392


Jiajia MA, Scott CA, Ho YN, Mahabaleshwar H, Marsay KS, Zhang C, Teow CKJ, Ng SS, Zhang W, Tergaonkar V, Partridge LJ, Roy S, Amaya E, Carney TJ. Matriptase generates a tissue damage response via promoting Gq signalling, leading to RSK and DUOX activation. BioRxiv. 2021 Jan. Ahead of print.

Human tissue

391


Jiang H, Patil K, Vashi A, Wang Y, Strickland E, Pai SB. Cellular molecular and proteomic profiling deciphers the SIRT1 controlled cell death pathways in esophageal adenocarcinoma cells. Cancer Treat Res Commun. 2021 Jan; 26: 100271.

Human cell line

390


Rocha FG, Ottenberg G, Eure ZG, Davey ME, Gibson FC 3rd. Sphingolipid Containing Outer Membrane Vesicles Serve as a Delivery Vehicle to Limit Macrophage Immune Response to Porphyromonas gingivalis. Infect Immun. 2020 Dec; IAI. 00614-20.

Human cell line

389


Ibrahimovic M, Franzmann E, Mondul AM, Weh KM, Howard C, Hu JJ, Goodwin WJ, Kresty LA. Disparities in Head and Neck Cancer: A Case for Chemoprevention with Vitamin D. Nutrients. 2020 Aug; 12(9): 2638.

Cancer cell line

388


Iosef C, Pedroza AJ, Cui JZ, Dalal AR, Arakawa M, Tashima Y, Koyano TK, Burdon G, Churovich SMP, Orrick JO, Pariani M, Fischbein MP. Quantitative proteomics reveal lineage-specific protein profiles in iPSC-derived Marfan syndrome smooth muscle cells. Sci Rep. 2020 Nov; 10(1): 20392.

Human tissue

387


Nguyen K, Chau VQ, Mauro AG, Durrant D, Toldo S, Abbate A, Das A, Salloum FN. Hydrogen Sulfide Therapy Suppresses Cofilin-2 and Attenuates Ischemic Heart Failure in a Mouse Model of Myocardial Infarction. J Cardiovasc Pharmacol Ther. 2020 Sep; 25(5): 472-483.

Rat plasma

386


Gupte R, Dhagia V, Rocic P, Ochi R, Gupte SA. Glucose-6-phosphate dehydrogenase increases Ca2+ currents by interacting with Cav1.2 and reducing intrinsic inactivation of the L-type calcium channel. Am J Physiol Heart Circ Physiol. 2020 Jul; 319(1): H144-H158.

Rat tissue

385


Álvarez-Izquierdo M, Esteban JG, Muñoz-Antoli C, Toledo R. Ileal proteomic changes associated with IL-25-mediated resistance against intestinal trematode infections. Parasites Vectors. 2020 Jul; 13(1): 336.

Mouse intestine

384


Oh C, Kim Y, Chang KO. Caspase-mediated cleavage of nucleocapsid protein of a protease-independent porcine epidemic diarrhea virus strain. Virus Research. 2020 Aug; 285: 198026.

Human cell line

383


Kumar S, Singh SK, Viswakarma N, Sondarva G, Nair RS, Sethupathi P, Sinha SC, Emmadi R, Hoskins K, Danciu O, Thatcher GRJ, Rana B, Rana A. Mixed Lineage Kinase 3 inhibition induces T cell activation and cytotoxicity. PNAS. 2020 Apr; 117(14): 7961-7970.

Human T cells

382


Paes VM, de Figueiredo JR, Ryan PL, Willard ST, Feugang JM. Comparative Analysis of Porcine Follicular Fluid Proteomes of Small and Large Ovarian Follicles. Biology (Basel). 2020 May; 9(5): E101.

Porcine ovarian follicles

381


Vasquez PL, Mishra S, Kuppuswamy SK, Crowley PJ, Brady J. Protein Interactomes Identify Distinct Pathways for Streptococcus mutans YidC1 and YidC2 Membrane Protein Insertases. BioRxiv. 2020 Apr.

Bacteria

380


Shires SE, Quiles JM, Najor RH, Leon LJ, Cortez MQ, Lampert MA, Mark A, Gustafsson ÅB. Nuclear Parkin Activates the ERRα Transcriptional Program and Drives Widespread Changes in Gene Expression Following Hypoxia. Sci Rep. 2020 May; 10(1): 8499.

Mouse heart

379


Li H, Wang Y, Pang X, Xie C, Deeg HJ, Wang H, Wan T, Wu J, Guan F, Li X. Elevated TWIST1 expression in myelodysplastic syndromes/acute myeloid leukemia reduces efficacy of hypomethylating therapy with decitabine. Haematologica. 2020 Jan; 105(10): e502.

Human cell line

378


Kim H, Walsh MC, Yu J, Laskoski P, Takigawa K, Takegahara N, Choi Y. Methylosome protein 50 associates with the purinergic receptor P2X5 and is involved in osteoclast maturation. FEBS Lett. 2020 Jan; 594(1): 144-152.

Human cell line

377


Sanchez TW, Li B, Molinaro C, Casiano CA, Bellinger DL, Mata-Greenwood E. Maternal plasma proteomics in a rat model of pregnancy complications reveals immune and pro-coagulant gene pathway activation. Am J Reprod Immunol. 2020 Feb; 83(2): e13205.

Rat serum

376


Todorov SD, Cavicchioli VQ, Ananieva M, Bivolarski VP, Vasileva TA, Hinkov AV, Todorov DG, Shishkov S, Haertlé T, Iliev IN, Nero LA, Ivanova IV. Expression of coagulin A with low cytotoxic activity by Pediococcus pentosaceus ST65ACC isolated from raw milk cheese. J Appl Microbiol. 2019 Oct; 128(2): 458-472.

Bacteria

375


Li X, Wang L, Cykowski M, He T, Liu T, Chakranarayan J, Rivera A, Zhao H, Powell S, Xia W, Wong STC. OCIAD1 contributes to neurodegeneration in Alzheimer's disease by inducing mitochondria dysfunction, neuronal vulnerability and synaptic damages. EBioMedicine. 2020 Jan; 51: 102569.

Mouse brain

374


Sharma M, Molehin D, Castro-Piedras I, Martinez EG, Pruitt K. Acetylation of conserved DVL-1 lysines regulates its nuclear translocation and binding to gene promoters in triple-negative breast cancer. Sci Rep. 2019 Nov; 9(1): 16257.

Human cell line

373


Benedetti F, Krishnan S, Cocchi F, Tettelin H, Gallo RC, Zella D, Curreli S. Proteome analysis of Mycoplasma fermentans cultured under aerobic and anaerobic conditions. Translational Medicine Communications. 2019 Oct; 4(1): 15.

Bacteria

372


LaFavers KA, Macedo E, Garimella PS, Lima C, Khan S, Myslinski J, McClintick J, Witzmann FA, Winfree S, Phillips CL, Hato T, Dagher PC, Wu XR, El-Achkar TM, Micanovic R. Circulating uromodulin inhibits systemic oxidative stress by inactivating the TRPM2 channel. Science Translational Medicine. 2019 Oct; 11(512): eaaw3639.

Mouse tissue

371


Poudyal D, Yang J, Chen Q, Goswami S, Adelsberger JW, Das S, Herman A, Hornung RL, Andresson T, Imamichi T. IL-27 posttranslationally regulates Y-box binding protein-1 to inhibit HIV-1 replication in human CD4+ T cells. AIDS. 2019 Oct; 33(12): 1819–1830.

Human blood T cells

370


Gargaro M, Vacca C, Massari S, Scalisi G, Manni G, Mondanelli G, Mazza EMC, Bicciato S, Pallotta MT, Orabona C, Belladonna ML, Volpi C, Bianchi R, Matino D, Iacono A, Panfili E, Proietti E, Iamandii IM, Cecchetti V, Puccetti P, Tabarrini O, Fallarino F, Grohmann U. Engagement of Nuclear Coactivator 7 by 3-Hydroxyanthranilic Acid Enhances Activation of Aryl Hydrocarbon Receptor in Immunoregulatory Dendritic Cells. Front Immunol. 2019 Aug; 10: 1973.

Mouse blood cells

369


Chen M, Sutherland A, Birrueta G, Laubach S, Leonard S, Peters B, Schulten V. Analysis of Allergen-Specific T Cell and IgE Reactivity to Different Preparations of Cow's Milk-Containing Food Extracts. Cells. 2019 Jul; 8(7): 667.

Cow’s milk

368


Lellis AD, Patrick RM, Mayberry LK, Lorence A, Campbell ZC, Roose JL, Frankel LK, Bricker TM, Hellmann HA, Mayberry RW, Zavala AS, Choy GS, Wylie DC, Abdul-Moheeth M, Masood A, Prater AG, Van Hoorn HE, Cole NA, Browning KS. eIFiso4G Augments the Synthesis of Specific Plant Proteins Involved in Normal Chloroplast Function. Plant Physiol. 2019 Sep; 181(1): 85-96.

Plant tissue

367


Oh HYP, Ellero-Simatos S, Manickam R, Tan NS, Guillou H, Wahli W. Depletion of Gram-Positive Bacteria Impacts Hepatic Biological Functions During the Light Phase. Int J Mol Sci. 2019 Feb; 20(4): 812.

Mouse tissue

366


Medrano E, Merselis DG, Bellantuono AJ, Rodriguez-Lanetty M. Proteomic Basis of Symbiosis: A Heterologous Partner Fails to Duplicate Homologous Colonization in a Novel Cnidarian- Symbiodiniaceae Mutualism. Front Microbiol. 2019 May; 10: 1153.

Reef corals and sea anemones

365


Hughes CK, Maalouf SW, Liu WS, Pate JL. Molecular profiling demonstrates modulation of immune cell function and matrix remodeling during luteal rescue. Biol Reprod. 2019 Jun; 100(6): 1581-1596.

Bovine cells

364


White CR, Dungan M, Carrithers MD. Activation of human macrophage sodium channels regulates RNA processing to increase expression of the DNA repair protein PPP1R10. Immunobiology. 2019 Jan; 224(1): 80-93.

Human cells

363


Stone S, Abreu D, Mahadevan J, Asada R, Kries K, Graf R, Marshall BA, Hershey T, Urano F. Pancreatic stone protein/regenerating protein is a potential biomarker for endoplasmic reticulum stress in beta cells. Sci Rep. 2019 Mar; 9(1): 5199.

Human cells

362


Manna PR, Ahmed AU, Vartak D, Molehin D, Pruitt K. Overexpression of the steroidogenic acute regulatory protein in breast cancer: Regulation by histone deacetylase inhibition. Biochem Biophys Res Commun. 2019 Feb; 509(2): 476-482.

Human cell line

361


Gama Sosa MA, De Gasperi R, Perez Garcia GS, Perez GM, Searcy C, Vargas D, Spencer A, Janssen PL, Tschiffely AE, McCarron RM, Ache B, Manoharan R, Janssen WG, Tappan SJ, Hanson RW, Gandy S, Hof PR, Ahlers ST, Elder GA. Low-level blast exposure disrupts gliovascular and neurovascular connections and induces a chronic vascular pathology in rat brain. Acta Neuropathol Commun. 2019 Jan; 7(1): 6.

Mouse tissue

360


Roy R, Hahm ER, White AG, Anderson CJ, Singh SV. AKT-dependent sugar addiction by benzyl isothiocyanate in breast cancer cells. Mol Carcinog. 2019 Jun; 58(6): 996-1007.

Human cell line

359


Cia MC, de Carvalho G, Azevedo RA, Monteiro-Vitorello CB, Souza GM, Nishiyama-Junior MY, Lembke CG, Antunes de Faria RSDC, Marques JPR, Melotto M, Camargo LEA. Novel Insights Into the Early Stages of Ratoon Stunting Disease of Sugarcane Inferred from Transcript and Protein Analysis. Phytopathology. 2018 Dec; 108(12): 1455-1466.

Plant tissue

358


Leiphrakpam PD, Brattain MG, Black JD, Wang J. TGFβ and IGF1R signaling activates protein kinase A through differential regulation of ezrin phosphorylation in colon cancer cells. J Biol Chem. 2018 May; 293(21): 8242-8254.

Human cells

357


Wei C, Stock L, Schneider-Gold C, Sommer C, Timchenko NA, Timchenko L. Reduction of Cellular Nucleic Acid Binding Protein Encoded by a Myotonic Dystrophy Type 2 Gene Causes Muscle Atrophy. Mol Cell Biol. 2018 Jun; 38(14): e00649-17.

Mouse muscle

356


Nowak G, Bakajsova-Takacsova D. Protein kinase Cε targets respiratory chain and mitochondrial membrane potential but not F0 F1 -ATPase in renal cells injured by oxidant. J Cell Biochem. 2018 Nov; 119(11): 9394-9407.

Mitochondria

355


Bassett B, Waibel B, White A, Hansen H, Stephens D, Koelper A, Larsen EM, Kim C, Glanzer A, Lavis LD, Hoops GC, Johnson RJ. Measuring the Global Substrate Specificity of Mycobacterial Serine Hydrolases Using a Library of Fluorogenic Ester Substrates. ACS Infect Dis. 2018 Jun; 4(6): 904-911.

Bacteria

354


Sharma S, Hartmann JD, Watzinger P, Klepper A, Peifer C, Kötter P, Lafontaine DLJ, Entian KD. A single N1-methyladenosine on the large ribosomal subunit rRNA impacts locally its structure and the translation of key metabolic enzymes. Sci Rep. 2018 Aug; 8(1): 11904.

Yeast

353


Hato T, Zollman A, Plotkin Z, El-Achkar TM, Maier BF, Pay SL, Dube S, Cabral P, Yoshimoto M, McClintick J, Dagher PC. Endotoxin Preconditioning Reprograms S1 Tubules and Macrophages to Protect the Kidney. J Am Soc Nephrol. 2018 Jan; 29(1): 104-117.

Mouse tissue

352


Jorrin-Novo JV, Komatsu S, Sanchez-Lucas R, Rodríguez de Francisco LE. Gel electrophoresis-based plant proteomics: Past, present, and future. Happy 10th anniversary Journal of Proteomics! J Proteomics. 2019 Apr; 198:1-10.

Plant tissue

351


Huppert LA, Sinclair M, Lai JC. Identifying Novel Biomarkers of Frailty in Cirrhosis: Results from an Unbiased Proteomics Search from the Functional Assessment in Liver Transplantation (FrAILT) Study. OBM Transplantation. 2018 Nov; 2(4): 028.

Human plasma

350


Lyu Q, Dhagia V, Han Y, Guo B, Wines-Samuelson ME, Christie CK, Yin Q, Slivano OJ, Herring P, Long X, Gupte SA, Miano JM. CRISPR-Cas9-Mediated Epitope Tagging Provides Accurate and Versatile Assessment of Myocardin-Brief Report. Arterioscler Thromb Vasc Biol. 2018 Sep; 38(9): 2184-2190.

Mouse tissue

349


Das A, Durrant D, Koka S, Salloum FN, Xi L, Kukreja RC. Mammalian target of rapamycin (mTOR) inhibition with rapamycin improves cardiac function in type 2 diabetic mice: potential role of attenuated oxidative stress and altered contractile protein expression. J Biol Chem. 2014 Feb; 289(7): 4145-60.

Mouse heart

348


Mocholi E, Dowling SD, Botbol Y, Gruber RC, Ray AK, Vastert S, Shafit-Zagardo B, Coffer PJ, Macian F. Autophagy Is a Tolerance-Avoidance Mechanism that Modulates TCR-Mediated Signaling and Cell Metabolism to Prevent Induction of T Cell Anergy. Cell Rep. 2018 Jul; 24(5): 1136-1150.

Human T cells

347


Eldakak M, Das A, Zhuang Y, Rohila JS, Glover K, Yen Y. A Quantitative Proteomics View on the Function of Qfhb1, a Major QTL for Fusarium Head Blight Resistance in Wheat. Pathogens. 2018 Jun; 7(3): 58.

Wheat

346


Coleman JL, Toledo A, Benach JL. HtrA of Borrelia burgdorferi Leads to Decreased Swarm Motility and Decreased Production of Pyruvate. mBio. 2018 Jul; 9(4): e01136-18.

Bacteria

345


Kaspar J, Shields RC, Burne RA. Competence inhibition by the XrpA peptide encoded within the comX gene of Streptococcus mutans. Mol Microbiol. 2018 Aug; 109(3): 345-364.

Bacteria

344


Molehin D, Castro-Piedras I, Sharma M, Sennoune SR, Arena D, Manna PR, Pruitt K. Aromatase Acetylation Patterns and Altered Activity in Response to Sirtuin Inhibition. Mol Cancer Res. 2018 Oct; 16(10): 1530-1542.

Human cells

343


Herrera-Gamboa JG, López-Alvarado CB, Pérez-Ortega E, Damas-Buenrostro LC, Cabada-Amaya JC, Pereyra-Alférez B. Proteomic analysis of two malting barleys (Hordeum vulgare L.) and their impact on wort quality. Journal of Cereal Science. 2018 Mar; 80: 150-157.

Malted barley

342


Faccidomo S, Swaim KS, Saunders BL, Santanam TS, Taylor SM, Kim M, Reid GT, Eastman VR, Hodge CW. Mining the nucleus accumbens proteome for novel targets of alcohol self-administration in male C57BL/6J mice. Psychopharmacology (Berl). 2018 Jun; 235(6): 1681-1696.

Mouse brain

341


Bonilla JC, Ryan V, Yazar G, Kokini JL, Bhunia AK. Conjugation of Specifically Developed Antibodies for High- and Low-Molecular-Weight Glutenins with Fluorescent Quantum Dots as a Tool for Their Detection in Wheat Flour Dough. J Agric Food Chem. 2018 Apr 25; 66(16): 4259-4266.

Plant

340


Potter DR, Miyazawa BY, Gibb SL, Deng X, Togaratti PP, Croze RH, Srivastava AK, Trivedi A, Matthay M, Holcomb JB, Schreiber MA, Pati S. Mesenchymal stem cell-derived extracellular vesicles attenuate pulmonary vascular permeability and lung injury induced by hemorrhagic shock and trauma. J Trauma Acute Care Surg. 2018 Feb; 84(2): 245-256.

Mouse tissue

339


Wang Q, Da'dara AA, Skelly PJ. The blood fluke Schistosoma mansoni cleaves the coagulation protein high molecular weight kininogen (HK) but does not generate the vasodilator bradykinin. Parasites & Vectors. 2018 Mar; 11(1): 182.

Parasites

338


Feugang JM, Liao SF, Willard ST, Ryan PL. In-depth proteomic analysis of boar spermatozoa through shotgun and gel-based methods. BMC Genomics. 2018 Jan; 19(1): 62.

Pig cells

337


Salman H, Shuai X, Nguyen-Lefebvre AT, Giri B, Ren M, Rauchman M, Robbins L, Hou W, Korkaya H, Ma Y. SALL1 expression in acute myeloid leukemia. Oncotarget. 2017 Dec; 9(7): 7442-7452.

Human cell line

336


Schulten V, Westernberg L, Birrueta G, Sidney J, Paul S, Busse P, Peters B, Sette A. Allergen and Epitope Targets of Mouse-Specific T Cell Responses in Allergy and Asthma. Front Immunol. 2018 Feb; 9: 235.

Mouse tissue

335


Duryee MJ, Wiese BM, Bowman JR, Vanlandingham JD, Klassen LW, Thiele GE, Hunter CD, Anderson DR, Mikuls TR, Thiele GM. Liver tissue metabolically transformed by alcohol induces immune recognition of liver self-proteins but not in vivo inflammation. Am J Physiol Gastrointest Liver Physiol. 2018 Mar; 314(3): G418-G430.

Mouse tissue

334


Qu Y, Olsen JR, Yuan X, Cheng PF, Levesque MP, Brokstad KA, Hoffman PS, Oyan AM, Zhang W, Kalland KH, Ke X. Small molecule promotes β-catenin citrullination and inhibits Wnt signaling in cancer. Nat Chem Biol. 2018 Jan; 14(1): 94-101.

Human cell line

333


C, Basa RCB, McCarthy MJ, Udeshi ND, Mertins P, Carr SA, Rouleau GA, Mastrangelo L, Li J, Gutierrez GJ, Brill LM, Venizelos N, Chen G, Nye JS, Manji H, Price JH, McClung CA, Akiskal HS, Alda M, Chuang DM, Coyle JT, Liu Y, Teng YD, Ohshima T, Mikoshiba K, Sidman RL, Halpain S, Haggarty SJ, Goshima Y, Snyder EY. Probing the lithium-response pathway in hiPSCs implicates the phosphoregulatory set-point for a cytoskeletal modulator in bipolar pathogenesis. Proc Natl Acad Sci USA. 2017 May; 114(22): E4462-E4471.

Human biopsy

332


Cai Y, Wee SYK, Chen J, Teo BHD, Ng YLC, Leong KP, Lu J. Broad Susceptibility of Nucleolar Proteins and Autoantigens to Complement C1 Protease Degradation. J Immunol. 2017 Dec; 199(12): 3981-3990.

Human cell line

331


Baldus PA, Brown M, Wright RS, Campbell JA, Lute S, Chavez B, Brorson K, Mozier N. Comparison of purification strategies for antibodies used in a broad spectrum host cell protein immunoassay. Biotechnol Bioeng. 2018 Feb; 115(2): 413-422.

HCP

330


Qin EY, Cooper DD, Abbott KL, Lennon J, Nagaraja S, Mackay A, Jones C, Vogel H, Jackson PK, Monje M. Neural Precursor-Derived Pleiotrophin Mediates Subventricular Zone Invasion by Glioma. Cell. 2017 Aug; 170(5): 845-859.e19.

Human cells

329


Agoglia AE, Holstein SE, Small AT, Spanos M, Burrus BM, Hodge CW. Comparison of the adolescent and adult mouse prefrontal cortex proteome. PLoS One. 2017 Jun; 12(6): e0178391.

Mouse brain tissue

328


Justiniano R, Perer J, Hua A, Fazel M, Krajisnik A, Cabello CM, Wondrak GT. A Topical Zinc Ionophore Blocks Tumorigenic Progression in UV-exposed SKH-1 High-risk Mouse Skin. Photochem Photobiol. 2017 Nov; 93(6): 1472-1482.

Human cell line

327


Abdi K, Chen T, Klein BA, Tai AK, Coursen J, Liu X, Skinner J, Periasamy S, Choi Y, Kessler BM, Palmer RJ, Gittis A, Matzinger P, Duncan MJ, Singh NJ. Mechanisms by which Porphyromonas gingivalis evades innate immunity. PLoS One. 2017 Aug; 12(8): e0182164.

Bacteria medium

326


Graham A, Holbert J, Nothnick WB. miR-181b-5p Modulates Cell Migratory Proteins, Tissue Inhibitor of Metalloproteinase 3, and Annexin A2 During In Vitro Decidualization in a Human Endometrial Stromal Cell Line. Reprod Sci. 2017 Sep; 24(9): 1264-1274.

Human cell line

325


Da'dara AA, Siddons G, Icaza M, Wang Q, Skelly PJ. How schistosomes alter the human serum proteome. Mol Biochem Parasitol. 2017 Jul; 215: 40-46.

Human serum

324


Duryee MJ, Clemens DL, Klassen LW, Mikuls TR, Pomplun MC, Anderson DR, Thiele GM. Identification of Malondialdehyde-Acetaldehyde-Modified Proteins From Affected Tissues in Rheumatoid Arthritis and Cardiovascular Disease. Circulation. 2017 Nov; 136: A16797.

Human biopsy

323


Pan M, Wang P, Zheng C, Zhang H, Lin S, Shao B, Zhuge Q, Jin K. Aging Systemic Milieu Impairs Outcome after Ischemic Stroke in Rats. Aging Dis. 2017 Oct; 8(5): 519-530.

Rat serum

322


Acevedo FE, Stanley BA, Stanley A, Peiffer M, Luthe DS, Felton GW. Quantitative proteomic analysis of the fall armyworm saliva. Insect Biochem Mol Biol. 2017 Jul; 86:81-92.

Insect saliva

321


Oseroff C, Christensen LH, Westernberg L, Pham J, Lane J, Paul S, Greenbaum J, Stranzl T, Lund G, Hoof I, Holm J, Würtzen PA, Meno KH, Frazier A, Schulten V, Andersen PS, Peters B, Sette A. Immunoproteomic analysis of house dust mite antigens reveals distinct classes of dominant T cell antigens according to function and serological reactivity. Clin Exp Allergy. 2017 Apr; 47(4): 577-592.

House dust mite

320


Papanagnou P, Stivarou T, Papageorgiou I, Papadopoulos GE, Pappas A. Marketed drugs used for the management of hypercholesterolemia as anticancer armament. Onco Targets Ther. 2017 Sep; 10: 4393-4411.

Human cell line

319


Tojais NF, Cao A, Lai YJ, Wang L, Chen PI, Alcazar MAA, de Jesus Perez VA, Hopper RK, Rhodes CJ, Bill MA, Sakai LY, Rabinovitch M. Codependence of Bone Morphogenetic Protein Receptor 2 and Transforming Growth Factor-β in Elastic Fiber Assembly and Its Perturbation in Pulmonary Arterial Hypertension. Arterioscler Thromb Vasc Biol. 2017 Aug; 37(8): 1559-1569.

Mouse tissue

318


Gill TA, Chu C, Pelz-Stelinski KS. Comparative proteomic analysis of hemolymph from uninfected and Candidatus Liberibacter asiaticus-infected Diaphorina citri. Amino Acids. 2017 Feb; 49(2): 389-406.

Insect

317


Garcia V, Gilani A, Shkolnik B, Pandey V, Zhang FF, Dakarapu R, Gandham SK, Reddy NR, Graves JP, Gruzdev A, Zeldin DC, Capdevila JH, Falck JR, Schwartzman ML. 20-HETE Signals Through G-Protein-Coupled Receptor GPR75 (Gq) to Affect Vascular Function and Trigger Hypertension. Circ Res. 2017 May; 120(11): 1776-1788.

Human cell line

316


Morgan MS, Rider SD Jr, Arlian LG. Identification of antigenic Sarcoptes scabiei proteins for use in a diagnostic test and of non-antigenic proteins that may be immunomodulatory. PLoS Negl Trop Dis. 2017 Jun; 11(6): e0005669.

Insects

315


Lakhdar R, Drost EM, MacNee W, Bastos R, Rabinovich RA. 2D-DIGE proteomic analysis of vastus lateralis from COPD patients with low and normal fat free mass index and healthy controls. Respir Res. 2017 May; 18(1): 81.

Human biopsy

314


Die JV, Arora R, Rowland LJ. Proteome dynamics of cold-acclimating Rhododendron species contrasting in their freezing tolerance and thermonasty behavior. PLoS One. 2017 May; 12(5): e0177389.

Plant tissue

313


Gu Q, Mendsaikhan U, Khuchua Z, Jones BC, Lu L, Towbin JA, Xu B, Purevjav E. Dissection of Z-disc myopalladin gene network involved in the development of restrictive cardiomyopathy using system genetics approach. World J Cardiol. 2017 Apr; 9(4): 320-331.

Mouse tissue

312


Singh RK, Mallela RK, Hayes A, Dunham NR, Hedden ME, Enke RA, Fariss RN, Sternberg H, West MD, Nasonkin IO. Dnmt1, Dnmt3a and Dnmt3b cooperate in photoreceptor and outer plexiform layer development in the mammalian retina. Exp Eye Res. 2017 Jun; 159: 132-146.

Mouse retina

311


Lakhdar R, Drost EM, MacNee W, Bastos R, Rabinovich RA. 2D-DIGE proteomic analysis of vastus lateralis from COPD patients with low and normal fat free mass index and healthy controls. Respir Res. 2017 May; 18(1): 81.

Human muscle tissue

310


Thornton KJ, Chapalamadugu KC, Eldredge EM, Murdoch GK. Analysis of Longissimus thoracis Protein Expression Associated with Variation in Carcass Quality Grade and Marbling of Beef Cattle Raised in the Pacific Northwestern United States. J Agric Food Chem. 2017 Feb; 65(7): 1434-1442.

Cattle tissue

309


Justiniano R, Williams JD, Perer J, Hua A, Lesson J, Park SL, Wondrak GT. The B6 -vitamer Pyridoxal is a Sensitizer of UVA-induced Genotoxic Stress in Human Primary Keratinocytes and Reconstructed Epidermis. Photochem Photobiol. 2017 Jul; 93(4): 990-998.

Human cell line

308


Drigeard Desgarnier MC, Fournier F, Droit A, Rochette PJ. Influence of a pre-stimulation with chronic low-dose UVB on stress response mechanisms in human skin fibroblasts. PLoS One. 2017 Mar; 12(3): e0173740.

Human skin biopsies

307


Deguine J, Wei J, Barbalat R, Gronert K, Barton GM. Local TNFR1 Signaling Licenses Murine Neutrophils for Increased TLR-Dependent Cytokine and Eicosanoid Production. J Immunol. 2017 Apr; 198(7): 2865-2875.

Mouse cell line

306


Johnson WC, Taus NS, Reif KE, Bohaliga GA, Kappmeyer LS, Ueti MW. Analysis of Stage-Specific Protein Expression during Babesia Bovis Development within Female Rhipicephalus Microplus. J Proteome Res. 2017 Mar; 16(3): 1327-1338.

Parasite

305


Koirala P, Huang J, Ho TT, Wu F, Ding X, Mo YY. LncRNA AK023948 is a positive regulator of AKT. Nat Commun. 2017 Feb; 8: 14422.

Mouse tissue

304


Lopez IA, Acuna D, Edmond J. Modulatory Effects of Mild Carbon Monoxide Exposure in the Developing Mouse Cochlea. Neurochem Res. 2017 Jan; 42(1): 151-165.

Mouse tissue

303


Norton RL, Fredericks GJ, Huang Z, Fay JD, Hoffmann FW, Hoffmann PR. Selenoprotein K regulation of palmitoylation and calpain cleavage of ASAP2 is required for efficient FcγR-mediated phagocytosis. J Leukoc Biol. 2017 Feb; 101(2): 439-448.

Mouse tissue

302


MacPherson CW, Shastri P, Mathieu O, Tompkins TA, Burguière P. Genome-Wide Immune Modulation of TLR3-Mediated Inflammation in Intestinal Epithelial Cells Differs between Single and Multi-Strain Probiotic Combination. PLoS One. 2017 Jan 18; 12(1): e0169847.

Human cell line

301


Nowak G, Takacsova-Bakajsova D, Megyesi J. Deletion of protein kinase C-ε attenuates mitochondrial dysfunction and ameliorates ischemic renal injury. Am J Physiol Renal Physiol. 2017 Jan; 312(1): F109-F120.

Mouse tissue

300


Cho KI, Yoon D, Qiu S, Danziger Z, Grill WM, Wetsel WC, Ferreira PA. Loss of Ranbp2 in motoneurons causes disruption of nucleocytoplasmic and chemokine signaling, proteostasis of hnRNPH3 and Mmp28, and development of amyotrophic lateral sclerosis-like syndromes. Dis Model Mech. 2017 May; 10(5): 559-579.

Mouse tissue

299


Akinci B, Sankella S, Gilpin C, Ozono K, Garg A, Agarwal AK. Progeroid syndrome patients with ZMPSTE24 deficiency could benefit when treated with rapamycin and dimethylsulfoxide. Cold Spring Harb Mol Case Stud. 2017 Jan; 3(1): a001339.

Human cell line

298


Iyer S, Park MJ, Moons D, Kwan R, Liao J, Liu L, Omary MB. Clusterin and Pycr1 alterations associate with strain and model differences in susceptibility to experimental pancreatitis. Biochem Biophys Res Commun. 2017 Jan; 482(4): 1346-1352.

Mouse tissue

297


Tu MJ, Pan YZ, Qiu JX, Kim EJ, Yu AM. MicroRNA-1291 targets the FOXA2-AGR2 pathway to suppress pancreatic cancer cell proliferation and tumorigenesis. Oncotarget. 2016 Jul; 7(29): 45547-45561.

Human cell line

296


Serafín-Higuera I, Garibay-Cerdenares OL, Illades-Aguiar B, Flores-Alfaro E, Jiménez-López MA, Sierra-Martínez P, Alarcón-Romero Ldel C. Differential proteins among normal cervix cells and cervical cancer cells with HPV-16 infection, through mass spectrometry-based Proteomics (2D-DIGE) in women from Southern México. Proteome Sci. 2016 Sep; 14(1): 10.

Human biopsy

295


Das A, Eldakak M, Paudel B, Kim DW, Hemmati H, Basu C, Rohila JS. Leaf Proteome Analysis Reveals Prospective Drought and Heat Stress Response Mechanisms in Soybean. Biomed Res Int. 2016 Mar; 2016: 6021047.

Plant tissue

294


Boşgelmez İ, Güvendik G, Dilbaz N, Saraçbaşı T, Esen M. A Combinatorial Approach in Discrimination of Alcohol Use Disorders: Inclusion of Differentially Expressed Plasma Proteins. Acta Medica. 2016 Dec; 47(3): 99-108.

Human plasma

293


Evans H, Flynn AF, Mitre E. Endothelial cells release soluble factors that support the long-term survival of filarial worms in vitro. Exp Parasitol. 2016 Nov; 170: 50-58.

Parasite

292


Zheng X, Krakowiak J, Patel N, Beyzavi A, Ezike J, Khalil AS, Pincus D. Dynamic control of Hsf1 during heat shock by a chaperone switch and phosphorylation. Elife. 2016 Nov; 5: e18638.

Yeast

291


Singh AR, Strankman A, Orkusyan R, Purwantini E, Rawat M. Lack of mycothiol and ergothioneine induces different protective mechanisms in Mycobacterium smegmatis. Biochem Biophys Rep. 2016 Nov; 8: 100–106.

Bacteria

290


Taylor DD, Gercel-Taylor C, inventors; University of Louisville Research Foundation, assignee. Methods of predicting and decreasing the risk of pre-term birth. United States Patent US9417249 B2. 2016 Aug.

Human cells

289


Renault D, Puzin C, Foucreau N, Bouchereau A, Pétillon J. Chronic exposure to soil salinity in terrestrial species: Does plasticity and underlying physiology differ among specialized ground-dwelling spiders? J Insect Physiol. 2016 Jul; 90: 49-58.

Insect

288


Yang J, Zhou Y, Zhang L, Shah N, Jin C, Palmer RJ Jr, Cisar JO. Cell Surface Glycoside Hydrolases of Streptococcus gordonii Promote Growth in Saliva. Appl Environ Microbiol. 2016 Aug; 82(17): 5278-86.

Bacteria

287


Shamseldin A, El-Rahim WMA, Moawad H, Sadowsky MJ. Use of Proteomic Tools to Analyze Genes Involved in Thermal- and Alkaline-Tolerance Rhizobium Strains Nodulating Egyptian Clover. Res J Pharm Biol Chem Sci. 2016 Sep; 7(5): 2994-3004.

Bacteria

286


Sourial M, Doering LC. Astrocyte-Secreted Factors Selectively Alter Neural Stem and Progenitor Cell Proliferation in the Fragile X Mouse. Front Cell Neurosci. 2016 May; 10: 126.

Mouse tissue

285


Beauvais G, Bode NM, Watson JL, Wen H, Glenn KA, Kawano H, Harata NC, Ehrlich ME, Gonzalez-Alegre P. Disruption of Protein Processing in the Endoplasmic Reticulum of DYT1 Knock-in Mice Implicates Novel Pathways in Dystonia Pathogenesis. J Neurosci. 2016 Oct; 36(40): 10245-10256.

Mouse tissue

284


Ho TT, Huang J, Zhou N, Zhang Z, Koirala P, Zhou X, Wu F, Ding X, Mo YY. Regulation of PCGEM1 by p54/nrb in prostate cancer. Sci Rep. 2016 Sep; 6: 34529.

Human biopsy

283


Gupta N, Thakker S, Verma SC. KSHV encoded LANA recruits Nucleosome Assembly Protein NAP1L1 for regulating viral DNA replication and transcription. Sci Rep. 2016 Sep; 6: 32633.

Virus

282


Bermudez JY, Webber HC, Patel GC, Yan LY, Clark AF, Mao WM. Two-Dimensional Differential In-Gel Electrophoresis (2D-DIGE) Reveals Proteins Associated with Cross-Linked Actin Networks in Human Trabecular Meshwork Cells. J Clin Exp Ophthalmol. 2016 Jan; 7(4): 584.

Human cell line

281


Kuhns DB, Fink DL, Choi U, Sweeney C, Lau K, Priel DL, Riva D, Mendez L, Uzel G, Freeman AF, Olivier KN, Anderson VL, Currens R, Mackley V, Kang A, Al-Adeli M, Mace E, Orange JS, Kang E, Lockett SJ, Chen D, Steinbach PJ, Hsu AP, Zarember KA, Malech HL, Gallin JI, Holland SM. Cytoskeletal abnormalities and neutrophil dysfunction in WDR1 deficiency. Blood. 2016 Oct; 128(17): 2135-2143.

Human biopsy

280


Chettimada S, Joshi SR, Dhagia V, Aiezza A II, Lincoln TM, Gupte R, Miano JM, Gupte SA. Vascular smooth muscle cell contractile protein expression is increased through protein kinase G-dependent and -independent pathways by glucose-6-phosphate dehydrogenase inhibition and deficiency. Am J Physiol Heart Circ Physiol. 2016 Oct; 311(4): H904-H912.

Mouse tissue

279


Yasuda R, Szatmari E, inventors; Max Planck Florida Institute For Neuroscience, assignee. Memory Performance and Prevention and Treatment of Neurodegenerative Diseases United States Patent US20160213632 A1. 2016 Jul.

Mouse brain

278


Salling MC, Faccidomo SP, Li C, Psilos K, Galunas C, Spanos M, Agoglia AE, Kash TL, Hodge CW. Moderate Alcohol Drinking and the Amygdala Proteome: Identification and Validation of Calcium/Calmodulin Dependent Kinase II and AMPA Receptor Activity as Novel Molecular Mechanisms of the Positive Reinforcing Effects of Alcohol. Biol Psychiatry. 2016 Mar; 79(6): 430-42.

Mouse brain

277


Cheng S, Liang X, Wang Y, Jiang Z, Liu Y, Hou W, Li S, Zhang J, Wang Z. The circadian Clock gene regulates acrosin activity of sperm through serine protease inhibitor A3K. Exp Biol Med (Maywood). 2016 Jan; 241(2): 205-15.

Mouse sperm

276


Die JV, Arora R, Rowland LJ. Global patterns of protein abundance during the development of cold hardiness in blueberry. Environ Exp Bot. 2016 Apr; 124: 11-21.

Blueberry buds

275


Paudel B, Das A, Tran M, Boe A, Palmer NA, Sarath G, Gonzalez-Hernandez JL, Rushton PJ, Rohila JS. Proteomic Responses of Switchgrass and Prairie Cordgrass to Senescence. Front Plant Sci. 2016 Mar; 7: 293.

Switchgrass and Cordgrass cells

274


Khurana T, Newman-Lindsay S, Young PR, Slater JE. The NPC2 protein: A novel dog allergen. Ann Allergy Asthma Immunol. 2016 May; 116(5): 440-446.e2.

Dog

273


Fischer CL, Dawson DV, Blanchette DR, Drake DR, Wertz PW, Brogden KA. Protein Analysis of Sapienic Acid-Treated Porphyromonas gingivalis Suggests Differential Regulation of Multiple Metabolic Pathways. J Bacteriol. 2015 Oct; 198(1): 157-67.

Bacteria

272


Merched AJ, Daret D, Li L, Franzl N, Sauvage-Merched M. Specific autoantigens in experimental autoimmunity-associated atherosclerosis. FASEB J. 2016 Jun; 30(6): 2123-34.

Mouse tissue

271


Grieger JC, Soltys SM, Samulski RJ. Production of Recombinant Adeno-associated Virus Vectors Using Suspension HEK293 Cells and Continuous Harvest of Vector From the Culture Media for GMP FIX and FLT1 Clinical Vector. Mol Ther. 2016. Feb; 24(2): 287-297.

Human cell line

270


Li YY, Wu C, Shah SS, Chen SM, Wangpaichitr M, Kuo MT, Feun LG, Han X, Suarez M, Prince J, Savaraj N. Degradation of AMPK-α1 sensitizes BRAF inhibitor-resistant melanoma cells to arginine deprivation. Mol Oncol. 2017 Dec; 11(12): 1806-1825.

Melanoma cells

269


Kanekura K, Yagi T, Cammack AJ, Mahadevan J, Kuroda M, Harms MB, Miller TM, Urano F. Poly-dipeptides encoded by the C9ORF72 repeats block global protein translation. Hum Mol Genet. 2016 May; 25(9): 1803-13.

Human biopsy

268


Mamai W, Simard F, Couret D, Ouedraogo GA, Renault D, Dabiré KR, Mouline K. Monitoring Dry Season Persistence of Anopheles gambiae s.l. Populations in a Contained Semi-Field System in Southwestern Burkina Faso, West Africa. J Med Entomol. 2016 Jan; 53(1): 130-8.

Insect

267


Rossetti S, Bshara W, Reiners JA, Corlazzoli F, Miller A, Sacchi N. Harnessing 3D models of mammary epithelial morphogenesis: An off the beaten path approach to identify candidate biomarkers of early stage breast cancer. Cancer Lett. 2016 Oct; 380(2): 375-83.

Cell line

266


Sourial M, Doering LC. Astrocyte-Secreted Factors Selectively Alter Neural Stem and Progenitor Cell Proliferation in the Fragile X Mouse. Front Cell Neurosci. 2016 May; 10: 126.

Mouse tissue

265


McCracken ML, Gorini G, McCracken LM, Mayfield RD, Harris RA, Trudell JR. Inter- and Intra-Subunit Butanol/Isoflurane Sites of Action in the Human Glycine Receptor. Front Mol Neurosci. 2016 Jun; 9: 45.

Cell line

264


Yang J, Zhou Y, Zhang L, Shah N, Jin C, Palmer RJ Jr, Cisar JO. Cell Surface Glycoside Hydrolases of Streptococcus gordonii Promote Growth in Saliva. Appl Environ Microbiol. 2016 Aug; 82(17): 5278-86.

Bacteria

263


Gonzalez-Carrillo C, Millan-Sauceda C, Lozano-Garza HG, Ortiz-Lopez R, Elizondo-Gonzalez R, Welsh O, Ocampo-Candiani J, Vera-Cabrera L. Genomic Changes Associated with the Loss of Nocardia brasiliensis Virulence in Mice after 200 In Vitro Passages. Infect Immun. 2016 Aug; 84(9): 2595-606.

Mouse tissue

262


Mendonça M, Moreira GM, Conceição FR, Hust M, Mendonça KS, Moreira ÂN, França RC, da Silva WP, Bhunia AK, Aleixo JA. Fructose 1,6-Bisphosphate Aldolase, a Novel Immunogenic Surface Protein on Listeria Species. PLoS One. 2016 Aug; 11(8): e0160544.

Bacteria

261


Kotlo K, Samarel AM, Chen HY, Aldstadt J, Danziger RS. Global comparison of phosphoproteins in human and rodent hearts: Implications for translational studies of myosin light chain and troponin phosphorylations. Springerplus. 2016 Jun; 5(1): 808.

Human and rat tissue

260


Dillon MB, Schulten V, Oseroff C, Paul S, Dullanty LM, Frazier A, Belles X, Piulachs MD, Visness C, Bacharier L, Bloomberg GR, Busse P, Sidney J, Peters B, Sette A. Different Bla-g T cell antigens dominate responses in asthma versus rhinitis subjects. Clin Exp Allergy. 2015 Dec; 45(12): 1856-67.

Human Cells

259


Jacob L, Leib R, Ollila HM, Bonvalet M, Adams CM, Mignot E. Comparison of Pandemrix and Arepanrix, two pH1N1 AS03-adjuvanted vaccines differentially associated with narcolepsy development. Brain Behav Immun. 2015 Jul; 47: 44-57.

Virus

258


Bajsa J, Pan Z, Duke SO. Cantharidin, a protein phosphatase inhibitor, strongly upregulates detoxification enzymes in the Arabidopsis proteome. J Plant Physiol. 2015 Jan; 173: 33-40.

Plant tissue

257


Venkatesh HS, Johung TB, Caretti V, Noll A, Tang Y, Nagaraja S, Gibson EM, Mount CW, Polepalli J, Mitra SS, Woo PJ, Malenka RC, Vogel H, Bredel M, Mallick P, Monje M. Neuronal Activity Promotes Glioma Growth through Neuroligin-3 Secretion. Cell. 2015 May; 161(4): 803-16.

Human biopsy tissue

256


Das JK, Felty Q. Microvascular lesions by estrogen-induced ID3: its implications in cerebral and cardiorenal vascular disease. J Mol Neurosci. 2015 Mar; 55(3): 618-31.

Cell line

255


Ramani K, Donoyan S, Tomasi ML, Park S. Role of methionine adenosyltransferase α2 and β phosphorylation and stabilization in human hepatic stellate cell trans-differentiation. J Cell Physiol. 2015 May; 230(5): 1075-85.

Cell line

254


Nowak G, Bakajsova D. Protein kinase C-α interaction with F0F1-ATPase promotes F0F1-ATPase activity and reduces energy deficits in injured renal cells. J Biol Chem. 2015 Mar; 290(11): 7054-66.

Mitochondria

253


Davis AL, Qiao S, Lesson JL, Rojo de la Vega M, Park SL, Seanez CM, Gokhale V, Cabello CM, Wondrak GT. The quinone methide aurin is a heat shock response inducer that causes proteotoxic stress and Noxa-dependent apoptosis in malignant melanoma cells. J Biol Chem. 2015 Jan; 290(3): 1623-38.

Human cell line

252


Kalinowska M, Castillo C, Francesconi A. Quantitative profiling of brain lipid raft proteome in a mouse model of fragile X syndrome. PLoS One. 2015 Apr; 10(4): e0121464.

Mouse tissue

251


Micanovic R, Khan S, El-Achkar TM. Immunofluorescence laser micro-dissection of specific nephron segments in the mouse kidney allows targeted downstream proteomic analysis. Physiol Rep. 2015 Feb; 3(2): e12306.

Mouse kidney

250


Chettimada S, Gupte R, Rawat D, Gebb SA, McMurtry IF, Gupte SA. Hypoxia-induced glucose-6-phosphate dehydrogenase overexpression and -activation in pulmonary artery smooth muscle cells: implication in pulmonary hypertension. Am J Physiol Lung Cell Mol Physiol. 2015 Feb; 308(3): L287-300.

Rat tissue

249


Rabadi MM, Xavier S, Vasko R, Kaur K, Goligorksy MS, Ratliff BB. High-mobility group box 1 is a novel deacetylation target of Sirtuin1.Kidney Int. 2015 Jan; 87(1): 95-108.

Mammalian cell line

248


Weng YC, Wang G, Messing RO, Chou WH. Identification of lipocalin-2 as a PKCδ phosphorylation substrate in neutrophils. J Biomed Sci. 2015 Mar; 22(1): 21.

Mouse heart

247


Park SL, Justiniano R, Williams JD, Cabello CM, Qiao S, Wondrak GT. The Tryptophan-Derived Endogenous Aryl Hydrocarbon Receptor Ligand 6-Formylindolo[3,2-b]Carbazole Is a Nanomolar UVA Photosensitizer in Epidermal Keratinocytes. J Invest Dermatol. 2015 Jun; 135(6): 1649-1658.

Human cell line

246


Poon E, Keung W, Liang Y, Ramalingam R, Yan B, Zhang S, Chopra A, Moore J, Herren A, Lieu DK, Wong HS, Weng Z, Wong OT, Lam YW, Tomaselli GF, Chen C, Boheler KR, Li RA. Proteomic Analysis of Human Pluripotent Stem Cell-Derived, Fetal, and Adult Ventricular Cardiomyocytes Reveals Pathways Crucial for Cardiac Metabolism and Maturation. Circ Cardiovasc Genet. 2015 Jun; 8(3): 427-36.

Human stem cells

245


Huang Y, Powers C, Madala SK, Greis KD, Haffey WD, Towbin JA, Purevjav E, Javadov S, Strauss AW, Khuchua Z. Cardiac metabolic pathways affected in the mouse model of barth syndrome. PLoS One. 2015 Jun; 10(6): e0128561.

Mouse tissue

244


Helenius TO, Misiorek JO, Nyström JH, Fortelius LE, Habtezion A, Liao J, Asghar MN, Zhang H, Azhar S, Omary MB, Toivola DM. Keratin 8 absence down-regulates colonocyte HMGCS2 and modulates colonic ketogenesis and energy metabolism. Mol Biol Cell. 2015 Jun; 26(12): 2298-310.

Mouse tissue

243


Zhou Q, Hu H, He CY, Li Z. Assembly and maintenance of the flagellum attachment zone filament in Trypanosoma brucei. J Cell Sci. 2015 Jul; 128(13): 2361-72.

Trypanosoma brucei

242


Winkler CW, Race B, Phillips K, Peterson KE. Capillaries in the olfactory bulb but not the cortex are highly susceptible to virus-induced vascular leak and promote viral neuroinvasion. Acta Neuropathol. 2015 Aug; 130(2): 233-45.

Mouse cell line

241


Hato T, Winfree S, Kalakeche R, Dube S, Kumar R, Yoshimoto M, Plotkin Z, Dagher PC. The macrophage mediates the renoprotective effects of endotoxin preconditioning. J Am Soc Nephrol. 2015 Jun; 26(6): 1347-62.

Mouse tissue

240


Forde N, Bazer FW, Spencer TE, Lonergan P. 'Conceptualizing' the Endometrium: Identification of Conceptus-Derived Proteins During Early Pregnancy in Cattle. Biol Reprod. 2015 Jun; 92(6): 156.

Cattle body fluid

239


Peterson MF, Otoc N, Sethi JK, Gupta A, Antes TJ. Integrated systems for exosome investigation. Methods. 2015 Oct; 87: 31–45.

Human cell line

238


Jeon SR, Lee JW, Jang PS, Chung NG, Cho B, Jeong DC. Anti-leukemic properties of deferasirox via apoptosis in murine leukemia cell lines. Blood Res. 2015 Mar; 50(1): 33-9.

Mouse cell line

236


Fisher DJ, Adams NE, Maurelli AT. Phosphoproteomic analysis of the Chlamydia caviae elementary body and reticulate body forms. Microbiology (Reading). 2015 Aug; 161(8): 1648-1658.

Bacteria

235


Stephan JS, Fioriti L, Lamba N, Colnaghi L, Karl K, Derkatch IL, Kandel ER. The CPEB3 Protein Is a Functional Prion that Interacts with the Actin Cytoskeleton. Cell Rep. 2015 Jun; 11(11): 1772-85.

Yeast

234


Hidalgo K, Mouline K, Mamai W, Foucreau N, Dabiré KR, Bouchereau A, Simard F, Renault D. Combining two-dimensional gel electrophoresis and metabolomic data in support of dry-season survival in the two main species of the malarial mosquito Anopheles gambiae. Data Brief. 2015 Sep; 5: 255-68.

Insect

233


Singh AK, Drolia R, Bai X, Bhunia AK. Streptomycin Induced Stress Response in Salmonella enterica Serovar Typhimurium Shows Distinct Colony Scatter Signature. PLoS One. 2015 Aug; 10(8): e0135035.

Bacteria

232


Johnson-Kerner BL, Garcia Diaz A, Ekins S, Wichterle H. Kelch Domain of Gigaxonin Interacts with Intermediate Filament Proteins Affected in Giant Axonal Neuropathy. PLoS One. 2015 Oct; 10(10): e0140157.

Human cell line

231


Pandey S, Simmons GE Jr, Malyarchuk S, Calhoun TN, Pruitt K. A novel MeCP2 acetylation site regulates interaction with ATRX and HDAC1. Genes Cancer. 2015 Sep; 6(9-10): 408-21.

Human cell line

230


Ooi TE, Yeap WC, Daim LD, Ng BZ, Lee FC, Othman AM, Appleton DR, Chew FT, Kulaveerasingam H. Differential abundance analysis of mesocarp protein from high- and low-yielding oil palms associates non-oil biosynthetic enzymes to lipid biosynthesis. Proteome Sci. 2015 Nov; 13: 28.

Plant

229


Hayashi G, Moro CF, Rohila JS, Shibato J, Kubo A, Imanaka T, Kimura S, Ozawa S, Fukutani S, Endo S, Ichikawa K, Agrawal GK, Shioda S, Hori M, Fukumoto M, Rakwal R. 2D-DIGE-based proteome expression changes in leaves of rice seedlings exposed to low-level gamma radiation at Iitate village, Fukushima. Plant Signal Behav. 2015 Dec; 10(12): e1103406.

Plant

228


Brown T, Rodriguez-Lanetty M. Defending against pathogens - immunological priming and its molecular basis in a sea anemone, cnidarian. Sci Rep. 2015 Dec; 5: 17425.

Sea anemone

227


Lu S, Kanekura K, Hara T, Mahadevan J, Spears LD, Oslowski CM, Martinez R, Yamazaki-Inoue M, Toyoda M, Neilson A, Blanner P, Brown CM, Semenkovich CF, Marshall BA, Hershey T, Umezawa A, Greer PA, Urano F. A calcium-dependent protease as a potential therapeutic target for Wolfram syndrome. PNAS USA. 2014 Dec; 111(49): E5292-301.

Mouse brain tissue

226


Shi J, Wang Y, Zeng L, Wu Y, Deng J, Zhang Q, Lin Y, Li J, Kang T, Tao M, Rusinova E, Zhang G, Wang C, Zhu H, Yao J, Zeng YX, Evers BM, Zhou MM, Zhou BP. Disrupting the interaction of BRD4 with diacetylated Twist suppresses tumorigenesis in basal-like breast cancer. Cancer Cell. 2014 Feb; 25(2): 210-25.

Cancer cells

225


Patil H, Saha A, Senda E, Cho KI, Haque M, Yu M, Qiu S, Yoon D, Hao Y, Peachey NS, Ferreira PA. Selective impairment of a subset of Ran-GTP-binding domains of ran-binding protein 2 (Ranbp2) suffices to recapitulate the degeneration of the retinal pigment epithelium (RPE) triggered by Ranbp2 ablation. J Biol Chem. 2014 Oct; 289(43): 29767-89.

Mouse tissue

224


Leiphrakpam PD, Rajput A, Mathiesen M, Agarwal E, Lazenby AJ, Are C, Brattain MG, Chowdhury S. Ezrin expression and cell survival regulation in colorectal cancer. Cell Signal. 2014 May; 26(5): 868-79.

Human tissue

223


Jones A, Kainz D, Khan F, Lee C, Carrithers MD. Human macrophage SCN5A activates an innate immune signaling pathway for antiviral host defense. J Biol Chem. 2014 Dec; 289(51): 35326-40.

Human macrophage

222


Bowman J, Ghosh P. A complex regulatory network controlling intrinsic multidrug resistance in Mycobacterium smegmatis. Mol Microbiol. 2014. Jan; 91(1): 121-34.

Bacteria

221


Cho KI, Patil H, Senda E, Wang J, Yi H, Qiu S, Yoon D, Yu M, Orry A, Peachey NS, Ferreira PA. Differential loss of prolyl isomerase or chaperone activity of Ran-binding protein 2 (Ranbp2) unveils distinct physiological roles of its cyclophilin domain in proteostasis. J Biol Chem. 2014 Feb; 289(8): 4600-25.

Mouse tissue

220


Sang Y, Brichalli W, Rowland RR, Blecha F. Genome-wide analysis of antiviral signature genes in porcine macrophages at different activation statuses. PLoS One. 2014 Feb; 9(2): e87613.

Macrophages

219


Wu Z, Sahin O, Wang F, Zhang Q. Proteomic identification of immunodominant membrane-related antigens in Campylobacter jejuni associated with sheep abortion. J Proteomics. 2014 Mar; 99: 111-22.

Bacteria

218


Das A, Durrant D, Koka S, Salloum FN, Xi L, Kukreja RC. Mammalian target of rapamycin (mTOR) inhibition with rapamycin improves cardiac function in type 2 diabetic mice: potential role of attenuated oxidative stress and altered contractile protein expression.  J Biol Chem. 2014 Feb; 289(7): 4145-60.

Mouse tissue

217


Le TT, Urasaki Y, Pizzorno G. Uridine prevents fenofibrate-induced fatty liver. PLoS One. 2014 Jan; 9(1): e87179.

Mouse tissue

216


Munje C, Shervington L, Khan Z, Shervington A. Could Upregulated Hsp70 Protein Compensate for the Hsp90-Silence-Induced Cell Death in Glioma Cells? Int J Brain Sci. 2014 Jan; 2014: 1-9.

Cell line

215


Mitra R, Goodman OB, Le TT. Enhanced detection of metastatic prostate cancer cells in human plasma with lipid bodies staining. BMC Cancer. 2014 Feb; 14: 91.

Human plasma

214


Lisanti MP, Federica S, inventors; Thomas Jefferson University, assignee. Biomarkers and their uses in cancer detection and therapy. United States Patent US20140026234 A1. 2014 Jan.

Human tissue

213


Subramanian A, Turner J, inventors; University of Nebraska, NuTech Ventures Inc, assignee. Methods of using ultrasound in tissue culture and tissue engineering. United States Patent US20140038257 A1 2014 Feb.

Tissue

212


Presley GN, Payea MJ, Hurst LR, Egan AE, Martin BS, Periyannan GR. Extracellular gluco-oligosaccharide degradation by Caulobacter crescentus. Microbiology (Reading). 2014 Mar; 160(Pt 3): 635-645.

Cell line

211


Ishikawa H, Ide T, Yagi T, Jiang X, Hirono M, Sasaki H, Yanagisawa H, Wemmer KA, Stainier DY, Qin H, Kamiya R, Marshall WF. TTC26/DYF13 is an intraflagellar transport protein required for transport of motility-related proteins into flagella. Elife. 2014 Jan; 3: e01566.

Mammalian cells

210


Li B, Iglesias-Pedraz JM, Chen LY, Yin F, Cadenas E, Reddy S, Comai L. Downregulation of the Werner syndrome protein induces a metabolic shift that compromises redox homeostasis and limits proliferation of cancer cells. Aging Cell. 2014 Apr; 13(2): 367-78.

Cell line

209


Alessio HM, Ansinelli H, Threadgill C, Hagerman AE. Comparison of gene and protein expressions in rats residing in standard cages with those having access to an exercise wheel. Biomed Res Int. 2014 2014: 950516.

Rat tissue

208


Burns G, Brooks K, Wildung M, Navakanitworakul R, Christenson LK, Spencer TE. Extracellular vesicles in luminal fluid of the ovine uterus. PLoS One. 2014 Mar; 9(3): e90913. 

Sheep tissue

207


Banerjee HN, Hyman G, Evans S, Manglik V, Gwebu E, Banerjee A, Vaughan D, Medley J, Krauss C, Wilkins J, Smith V, Banerji A, Rousch J. Identification of the Transmembrane Glucose Regulated Protein 78 as a Biomarker for the Brain Cancer Glioblastoma Multiforme by Gene Expression and Proteomic Studies. J Membr Sci Technol. 2014 Feb; 4(1): 1000126.

Human tissue

206


Amortegui J, Rodríguez-López A, Rodríguez D, Carrascal AK, Alméciga-Díaz CJ, Melendez Adel P, Sánchez OF. Characterization of a new bacteriocin from Lactobacillus plantarum LE5 and LE27 isolated from ensiled corn. Appl Biochem Biotechnol. 2014 Apr; 172(7): 3374-89.

Cell line

205


Forde N, McGettigan PA, Mehta JP, O'Hara L, Mamo S, Bazer FW, Spencer TE, Lonergan P. Proteomic analysis of uterine fluid during the pre-implantation period of pregnancy in cattle. Reproduction. 2014 Apr; 147(5): 575-87.

Cell line

204


Liu XF, Yu JQ, Dalan R, Liu AQ, Luo KQ. Biological factors in plasma from diabetes mellitus patients enhance hyperglycaemia and pulsatile shear stress-induced endothelial cell apoptosis. Integr Biol (Camb). 2014 May; 6(5): 511-22.

Human cell line

203


Banerjee Mustafi S, Grose JH, Zhang H, Pratt GW, Sadoshima J, Christians ES, Benjamin IJ. Aggregate-prone R120GCRYAB triggers multifaceted modifications of the thioredoxin system. Antioxid Redox Signal. 2014 Jun; 20(18): 2891-906.

Mouse tissue

202


Sridharan V, Aykin-Burns N, Tripathi P, Krager KJ, Sharma SK, Moros EG, Corry PM, Nowak G, Hauer-Jensen M, Boerma M. Radiation-induced alterations in mitochondria of the rat heart. Radiat Res. 2014 Mar; 181(3): 324-34.

Rat tissue

201


Abdi K, Singh NJ, Spooner E, Kessler BM, Radaev S, Lantz L, Xiao TS, Matzinger P, Sun PD, Ploegh HL. Free IL-12p40 monomer is a polyfunctional adaptor for generating novel IL-12-like heterodimers extracellularly. J Immunol. 2014 Jun; 192(12): 6028-36.

Cell line

200


Das JK, Felty Q. PCB153-induced overexpression of ID3 contributes to the development of microvascular lesions. PLoS One. 2014 Aug; 9(8): e104159.

Cell line

199


Banerjee HN, Hyman G, Evans S, Manglik V, Gwebu E, Banerjee A, Vaughan D, Medley J, Krauss C, Wilkins J, Smith V, Banerji A, Rousch J. Identification of the Transmembrane Glucose Regulated Protein 78 as a Biomarker for the Brain Cancer Glioblastoma Multiforme by Gene Expression and Proteomic Studies. J Membr Sci Technol. 2014 Feb; 4(1): 1000126.

Human tissue

198


Yavuz S, Kasap M, Akpinar G, Ozbudak E, Ural D, Berki T. Analysis of pericardial effusion from idiopathic pericarditis patients by two-dimensional gel electrophoresis. Biomed Res Int. 2014 Apr; 2014: 942718.

Human body fluid

197


Jiang X, Ye X, Guo W, Lu H, Gao Z. Inhibition of HDAC3 promotes ligand-independent PPARγ activation by protein acetylation. J Mol Endocrinol. 2014 Oct; 53(2): 191-200.

Human tissue

196


Schneider JL, Suh Y, Cuervo AM. Deficient chaperone-mediated autophagy in liver leads to metabolic dysregulation. Cell Metab. 2014 Sep; 20(3): 417-32.

Human body fluid

195


Nothnick WB, Graham A, Holbert J, Weiss MJ. miR-451 deficiency is associated with altered endometrial fibrinogen alpha chain expression and reduced endometriotic implant establishment in an experimental mouse model. PLoS One. 2014 Jun; 9(6): e100336.

Mouse tissue

194


Williams JD, Bermudez Y, Park SL, Stratton SP, Uchida K, Hurst CA, Wondrak GT. Malondialdehyde-derived epitopes in human skin result from acute exposure to solar UV and occur in nonmelanoma skin cancer tissue. J Photochem Photobiol B. 2014 Mar; 132: 56-65.

Human cell line

193


Wang JH, Singh R, Benoit M, Keyhan M, Sylvester M, Hsieh M, Thathireddy A, Hsieh YJ, Matin AC. Sigma S-dependent antioxidant defense protects stationary-phase Escherichia coli against the bactericidal antibiotic gentamicin. Antimicrob Agents Chemother. 2014 Oct; 58(10): 5964-75.

Bacteria

192


Maddi A, Haase E, Scannapieco F. Mass Spectrometric Analysis of Whole Secretome and Amylase-precipitated Secretome Proteins from Streptococcus gordonii. J Proteomics Bioinform. 2014 Sep; 7: 287-295.

Bacteria

191


Urasaki Y, Pizzorno G, Le TT. Uridine affects liver protein glycosylation, insulin signaling, and heme biosynthesis. PLoS One. 2014 Jun; 9(6): e99728.

Mouse tissue

190


Hidalgo K, Mouline K, Mamai W, Foucreau N, Dabiré KR, Bouchereau A, Simard F, Renault D. Novel insights into the metabolic and biochemical underpinnings assisting dry-season survival in female malaria mosquitoes of the Anopheles gambiae complex. J Insect Physiol. 2014 Nov; 70: 102-16.

Insect

189


Taylor DD, Gercel-Taylor C, inventors; University of Louisville Research Foundation, assignee. Methods of predicting and decreasing the risk of pre-term birth. European Patent EP2756302 B2. 2014 Jul.

Human Cells

188


Gupta D, Eldakak M, Rohila JS, Basu C. Biochemical analysis of 'kerosene tree' Hymenaea courbaril L. under heat stress. Plant Signal Behav. 2014 Oct; 9(10): e972851.

Kerosene tree leaves

187


Pflughoeft KJ, Swick MC, Engler DA, Yeo HJ, Koehler TM. Modulation of the Bacillus anthracis secretome by the immune inhibitor A1 protease. J Bacteriol. 2014 Jan; 196(2): 424-35.

Bacteria

186


Marman HE, Mey AR, Payne SM. Elongation factor P and modifying enzyme PoxA are necessary for virulence of Shigella flexneri. Infect Immun. 2014 Sep; 82(9): 3612-21.

Bacteria

185


Sette A, Schulten V, Grey H, Peters B, Greenbaum J, inventors; La Jolla Institute for Allergy and Immunology, assignee. Timothy grass allergens and methods and uses for immune response modulation. United States Patent WO2013119863 A1. 2013 Aug.

Mouse tissue

184


Robbins ML, Roy A, Wang PH, Gaffoor I, Sekhon RS, de O Buanafina MM, Rohila JS, Chopra S. Comparative proteomics analysis by DIGE and iTRAQ provides insight into the regulation of phenylpropanoids in maize. J Proteomics. 2013 Nov; 93: 254-75.

Maize

183


Hickman SE, Kingery ND, Ohsumi TK, Borowsky ML, Wang LC, Means TK, El Khoury J. The microglial sensome revealed by direct RNA sequencing. Nat Neurosci. 2013 Dec; 16(12): 1896-905.

Human tissue

182


Schulten V, Greenbaum JA, Hauser M, McKinney DM, Sidney J, Kolla R, Lindestam Arlehamn CS, Oseroff C, Alam R, Broide DH, Ferreira F, Grey HM, Sette A, Peters B. Previously undescribed grass pollen antigens are the major inducers of T helper 2 cytokine-producing T cells in allergic individuals. PNAS USA. 2013 Feb; 110(9): 3459-64.

Human cell line

181


Gupta P, Sothiselvam S, Vázquez-Laslop N, Mankin AS. Deregulation of translation due to post-transcriptional modification of rRNA explains why erm genes are inducible. Nat Commun. 2013 Jun; 4: 1984.

Bacteria

180


Nelson CM, Ackerman KM, O'Hayer P, Bailey TJ, Gorsuch RA, Hyde DR. Tumor necrosis factor-alpha is produced by dying retinal neurons and is required for Muller glia proliferation during zebrafish retinal regeneration. J Neurosci. 2013 Apr; 33(15): 6524-39.

Zebrafish

179


Corena-McLeod M, Walss-Bass C, Oliveros A, Gordillo Villegas A, Ceballos C, Charlesworth CM, Madden B, Linser PJ, Van Ekeris L, Smith K, Richelson E. New model of action for mood stabilizers: phosphoproteome from rat pre-frontal cortex synaptoneurosomal preparations. PLoS One. 2013 May; 8(5): e52147.

Rat brain

178


Cai W, Wannemuehler Y, Dell'anna G, Nicholson B, Barbieri NL, Kariyawasam S, Feng Y, Logue CM, Nolan LK, Li G. A novel two-component signaling system facilitates uropathogenic Escherichia coli's ability to exploit abundant host metabolites. PLoS Pathog. 2013 Jun; 9(6): e1003428.

Bacteria

177


Chapman KM, Powell HM, Chaudhary J, Shelton JM, Richardson JA, Richardson TE, Hamra FK. Linking spermatid ribonucleic acid (RNA) binding protein and retrogene diversity to reproductive success. Mol Cell Proteomics. 2013 Nov; 12(11): 3221-36.

Rat tissue

176


Wu H, Sun H, Liang X, Lima WF, Crooke ST. Human RNase H1 is associated with protein P32 and is involved in mitochondrial pre-rRNA processing. PLoS One. 2013 Aug; 8(8): e71006.

Immuno-precipitation

175


Rajkarnikar A, Strankman A, Duran S, Vargas D, Roberts AA, Barretto K, Upton H, Hamilton CJ, Rawat M. Analysis of mutants disrupted in bacillithiol metabolism in Staphylococcus aureus. Biochem Biophys Res Commun. 2013 Jun; 436(2): 128-33.

Bacteria

174


Yap MN, Bernstein HD. Mutations in the Escherichia coli ribosomal protein L22 selectively suppress the expression of a secreted bacterial virulence factor. J Bacteriol. 2013 Jul; 195(13): 2991-9.

Bacteria

173


Balestrieri ML, Gasparrini B, Neglia G, Vecchio D, Strazzullo M, Giovane A, Servillo L, Zicarelli L, D'Occhio MJ, Campanile G. Proteomic profiles of the embryonic chorioamnion and uterine caruncles in buffaloes (Bubalus bubalis) with normal and retarded embryonic development. Biol Reprod. 2013 May; 88(5): 119.

Buffalo embryos

172


Zhou ZH, Kumari N, Nekhai S, Clouse KA, Wahl LM, Yamada KM, Dhawan S. Heme oxygenase-1 induction alters chemokine regulation and ameliorates human immunodeficiency virus-type-1 infection in lipopolysaccharide-stimulated macrophages. Biochem Biophys Res Commun. 2013 Jun; 435(3): 373-7.

Human cells

171


Zhang A, Zhou N, Huang J, Liu Q, Fukuda K, Ma D, Lu Z, Bai C, Watabe K, Mo YY. The human long non-coding RNA-RoR is a p53 repressor in response to DNA damage. Cell Res. 2013 Mar; 23(3): 340-50.

Human cell line

170


Le TT, Ziemba A, Urasaki Y, Hayes E, Brotman S, Pizzorno G. Disruption of uridine homeostasis links liver pyrimidine metabolism to lipid accumulation. J Lipid Res. 2013 Apr; 54(4): 1044-57.

Mouse liver

169


Hu LY, Kontrogianni-Konstantopoulos A. The kinase domains of obscurin interact with intercellular adhesion proteins. FASEB J. 2013 May; 27(5): 2001-12.

Human cell line

168


Subramanian A, Turner JA, Budhiraja G, Guha Thakurta S, Whitney NP, Nudurupati SS. Ultrasonic bioreactor as a platform for studying cellular response. Tissue Eng Part C Methods. 2013 Mar; 19(3): 244-55.

Cartilage cells

167


Nowak G, Bakajsova D. Assessment of mitochondrial functions and cell viability in renal cells overexpressing protein kinase C isozymes. J Vis Exp. 2013 Jan; (71): 4301.

Mammalian cells

166


Shanks RM, Stella NA, Arena KE, Fender JE. Mutation of crp mediates Serratia marcescens serralysin and global secreted protein production. Res Microbiol. 2013 Jan; 164(1): 38-45.

Bacteria

165


Zhou H, Zhao Q, Das Singla L, Min J, He S, Cong H, Li Y, Su C. Differential proteomic profiles from distinct Toxoplasma gondii strains revealed by 2D-difference gel electrophoresis. Exp Parasitol. 2013 Apr; 133(4): 376-82.

Parasite

164


Bodnar A. Proteomic profiles reveal age-related changes in coelomic fluid of sea urchin species with different life spans. Exp Gerontol. 2013 May; 48(5): 525-30.

Sea urchin

163


Forde N, Mehta JP, McGettigan PA, Mamo S, Bazer FW, Spencer TE, Lonergan P. Alterations in expression of endometrial genes coding for proteins secreted into the uterine lumen during conceptus elongation in cattle. BMC Genomics. 2013 May; 14: 321.

Bovine tissue

162


Gris CF, Baldoni A. Proteomics and Its Use in Obtaining Superior Soybean Genotypes. IntechOpen. 2013 Jan; Chapter 25:  531-552. 

Soybean cells

161


Zhou X, Gewurz BE, Ritchie JM, Takasaki K, Greenfeld H, Kieff E, Davis BM, Waldor MK. A Vibrio parahaemolyticus T3SS effector mediates pathogenesis by independently enabling intestinal colonization and inhibiting TAK1 activation. Cell Rep. 2013 May; 3(5): 1690-702.

Bacteria

160


Hecht KA, Wytiaz VA, Ast T, Schuldiner M, Brodsky JL. Characterization of an M28 metalloprotease family member residing in the yeast vacuole. FEMS Yeast Res. 2013 Aug; 13(5): 471-84.

Yeast

159


Romano A, Trimble L, Hobusch AR, Schroeder KJ, Amin SA, Hartnett AD, Barker RA, Crumbliss AL, Carrano CJ. Regulation of iron transport related genes by boron in the marine bacterium Marinobacter algicola DG893. Metallomics. 2013 Aug; 5(8): 1025-30.

Bacteria

158


Páez-Gutiérrez IA, Cadavid LF. Identification of Differently Expressed Proteins Related to Drillings Fluids Exposure in Hydractinia Symbiolongicarpus by Mass Spectrometry. Advances in Computational Biology. 2014 Jan; 232: 345-353.

Marine hydra magnipapillata

157


Streckfus CF, Romaguera J, Guajardo-Streckfus C. The use of salivary protein secretions as an in vivo model to study Mantel cell lymphoma progression and treatment. Cancer Invest. 2013 Aug; 31(7): 494-9.

Human saliva

156


Hahm ER, Lee J, Kim SH, Sehrawat A, Arlotti JA, Shiva SS, Bhargava R, Singh SV. Metabolic alterations in mammary cancer prevention by withaferin A in a clinically relevant mouse model. J Natl Cancer Inst. 2013 Aug; 105(15): 1111-22.

Mouse tissue

155


Khan Z, Shervington A, Munje C, Shervington L. The complexity of identifying cancer stem cell biomarkers. Cancer Invest. 2013 Jul; 31(6): 404-11.

Stem cells

154


Streckfus C. Salivary proteome as an in vivo model to study breast cancer progression. Defense, Security, and Sensing. 2013 May; 8723: 03D.

Human saliva

153


Ma H, Qazi S, Ozer Z, Zhang J, Ishkhanian R, Uckun FM. Regulatory phosphorylation of Ikaros by Bruton's tyrosine kinase. PLoS One. 2013 Aug; 8(8): e71302.

Human cells

152


Sanchez-Alvarez R, Martinez-Outschoorn UE, Lin Z, Lamb R, Hulit J, Howell A, Sotgia F, Rubin E, Lisanti MP. Ethanol exposure induces the cancer-associated fibroblast phenotype and lethal tumor metabolism: implications for breast cancer prevention. Cell Cycle. 2013 Jan; 12(2): 289-301.

Human cell line

151


Nowak G, Soundararajan S, Mestril R. Protein kinase C-α interaction with iHSP70 in mitochondria promotes recovery of mitochondrial function after injury in renal proximal tubular cells. Am J Physiol Renal Physiol. 2013 Sep; 305(5): F764-76.


Mammalian cells

150


Fischer CL, Walters KS, Drake DR, Dawson DV, Blanchette DR, Brogden KA, Wertz PW. Oral mucosal lipids are antibacterial against Porphyromonas gingivalis, induce ultrastructural damage, and alter bacterial lipid and protein compositions. Int J Oral Sci. 2013 Sep; 5(3): 130-40.

Bacteria

149


Whitman JK, Alviar AF, Fleschner CR, Stuart MK. Monoclonal antibody 10A5 recognizes an antigen unique to the water-insoluble 25/45 membrane fraction of the rat ocular lens. Springerplus. 2013 Oct; 2: 500.

Rat lenses

148


Vyas AR, Hahm ER, Arlotti JA, Watkins S, Stolz DB, Desai D, Amin S, Singh SV. Chemoprevention of prostate cancer by d,l-sulforaphane is augmented by pharmacological inhibition of autophagy. Cancer Res. 2013 Oct; 73(19): 5985-95.

Human tissue

147


Tuteja S, Dunbar R, Qu L, Li M, Mucksavage M, DerOhannessian S, Reilly M, Rader D. Perilipin 1 (plin1) Genotype and Not Gpr109a Associated with Free Fatty Acid Rebound Following Niacin Administration. Arterioscler Thromb Vasc Biol. 2013 May; 33(5): A390.

Human tissue

146


Al Ghouleh I, Rodríguez A, Pagano PJ, Csányi G. Proteomic analysis identifies an NADPH oxidase 1 (Nox1)-mediated role for actin-related protein 2/3 complex subunit 2 (ARPC2) in promoting smooth muscle cell migration. Int J Mol Sci. 2013 Oct; 14(10): 20220-35.

Rat cells

145


Gao X, Sinha S, Belcastro M, Woodard C, Ramamurthy V, Stoilov P, Sokolov M. Splice isoforms of phosducin-like protein control the expression of heterotrimeric G proteins. J Biol Chem. 2013 Sep; 288(36): 25760-8.

Rat cells

144


Gorini G, Roberts AJ, Mayfield RD. Neurobiological Signatures of Alcohol Dependence Revealed by Protein Profiling. PLoS ONE. 2013 Dec; 8(12): e82656.

Mouse brain

143


Poon E, Yan B, Zhang S, Rushing S, Keung W, Ren L, Lieu DK, Geng L, Kong CW, Wang J, Wong HS, Boheler KR, Li RA. Transcriptome-guided functional analyses reveal novel biological properties and regulatory hierarchy of human embryonic stem cell-derived ventricular cardiomyocytes crucial for maturation. PLoS One. 2013 Oct; 8(10): e77784.

Stem cells

142


Wu Z, Sahin O, Shen Z, Liu P, Miller WG, Zhang Q. Multi-omics approaches to deciphering a hypervirulent strain of Campylobacter jejuni. Genome Biol Evol. 2013 Nov; 5(11) 2217-30.

Bacteria

141


Clement CC, Aphkhazava D, Nieves E, Callaway M, Olszewski W, Rotzschke O, Santambrogio L. Protein expression profiles of human lymph and plasma mapped by 2D-DIGE and 1D SDS-PAGE coupled with nanoLC-ESI-MS/MS bottom-up proteomics. J Proteomics. 2013 Jan; 78: 172-87.

Human tissue

140


Gonzalez JC, Medina SC, Rodriguez A, Osma JF, Alméciga-Díaz CJ, Sánchez OF. Production of Trametes pubescens Laccase under Submerged and Semi-Solid Culture Conditions on Agro-Industrial Wastes. PLoS One. 2013 Sep; 8(9): e73721.

Cell line

139


Bi F, Huang C, Tong J, Qiu G, Huang B, Wu Q, Li F, Xu Z, Bowser R, Xia XG, Zhou H. Reactive astrocytes secrete lcn2 to promote neuron death. PNAS USA. 2013 Mar; 110(1): 4069-4074.

Rat brain

138


Taylor DD, Gercel-Taylor C, inventors; University of Louisville Research Foundation, assignee. Methods of predicting and decreasing the risk of pre-term birth. United States Patent WO2013040211 A1. 2013 Mar.

Human cells

137


Caro P, Kishan AU, Norberg E, Stanley IA, Chapuy B, Ficarro SB, Polak K, Tondera D, Gounarides J, Yin H, Zhou F, Green MR, Chen L, Monti S, Marto JA, Shipp MA, Danial NN. Metabolic signatures uncover distinct targets in molecular subsets of diffuse large B cell lymphoma. Cancer Cell. 2012 Oct; 22(4): 547-60.

Human cells

136


Vaishampayan PA, Rabbow E, Horneck G, Venkateswaran KJ. Survival of Bacillus pumilus spores for a prolonged period of time in real space conditions. Astrobiology. 2012 May; 12(5): 487-97.

Bacteria

135


Engel BD, Ishikawa H, Wemmer KA, Geimer S, Wakabayashi K, Hirono M, Craige B, Pazour GJ, Witman GB, Kamiya R, Marshall WF. The role of retrograde intraflagellar transport in flagellar assembly, maintenance, and function. J Cell Biol. 2012 Oct; 199(1): 151-67.

Human biopsy

134


Kalupahana NS, Massiera F, Quignard-Boulange A, Ailhaud G, Voy BH, Wasserman DH, Moustaid-Moussa N. Overproduction of angiotensinogen from adipose tissue induces adipose inflammation, glucose intolerance, and insulin resistance. Obesity (Silver Spring). 2012 Jan; 20(1): 48-56.

Mouse tissue

133


de Castro RO, Zhang J, Groves JR, Barbu EA, Siraganian RP. Once phosphorylated, tyrosines in carboxyl terminus of protein-tyrosine kinase Syk interact with signaling proteins, including TULA-2, a negative regulator of mast cell degranulation. J Biol Chem. 2012 Mar; 287(11): 8194-204.

Human cells

132


McCoy KB, Derecho I, Wong T, Tran HM, Huynh TD, La Duc MT, Venkateswaran K, Mogul R. Insights into the extremotolerance of Acinetobacter radioresistens 50v1, a gram-negative bacterium isolated from the Mars Odyssey spacecraft. Astrobiology. 2012 Sep; 12(9): 854-62.

Bacteria

131


Hu Y, Matkovich SJ, Hecker PA, Zhang Y, Edwards JR, Dorn GW 2nd. Epitranscriptional orchestration of genetic reprogramming is an emergent property of stress-regulated cardiac microRNAs. PNAS USA. 2012 Nov; 109(48): 19864-9.

Rat heart tissue

130


Yang Y, Primrose DA, Leung AC, Fitzsimmons RB, McDermand MC, Missellbrook A, Haskins J, Smylie AS, Hughes SC. The PP1 phosphatase flapwing regulates the activity of Merlin and Moesin in Drosophila. Dev Biol. 2012 Jan; 361(2): 412-26.

Drosophila

129


Zhang HH, Feng L, Wang W, Magness RR, Chen DB. Estrogen-responsive nitroso-proteome in uterine artery endothelial cells: role of endothelial nitric oxide synthase and estrogen receptor-β. J Cell Physiol. 2012 Jan; 227(1): 146-59.

Human cell line

128


Kohlgraf KG, Ackermann AR, Burnell KK, Srikantha RN, Joly SA, Bartlett JA, Gakhar L, Johnson GK, McCray PB Jr, Guthmiller JM, Brogden KA. Quantitation of SPLUNC1 in saliva with an xMAP particle-based antibody capture and detection immunoassay. Arch Oral Biol. 2012 Feb; 57(2): 197-204.

Human saliva

127


Koka S, Xi L, Kukreja RC. Chronic treatment with long acting phosphodiesterase-5 inhibitor tadalafil alters proteomic changes associated with cytoskeletal rearrangement and redox regulation in Type 2 diabetic hearts.Basic Res Cardiol. 2012 Mar; 107(2): 249.

Mouse heart tissue

126


Lau CS, Wong DT. Breast cancer exosome-like microvesicles and salivary gland cells interplay alters salivary gland cell-derived exosome-like microvesicles in vitro. PLoS One. 2012 Mar; 7(3): e33037.

Human cells

125


Zhu SG, Xi L, Kukreja RC. Type 2 diabetic obese db/db mice are refractory to myocardial ischaemic post-conditioning in vivo: potential role for Hsp20, F1-ATPase δ and Echs1. J Cell Mol Med. 2012 Apr; 16(4): 950-8.

Mouse heart tissue

124


Streckfus CF, Arreola D, Edwards C, Bigler L. Salivary Protein Profiles among HER2/neu-Receptor-Positive and -Negative Breast Cancer Patients: Support for Using Salivary Protein Profiles for Modeling Breast Cancer Progression. J Oncol. 2012 Apr; 2012: 413256.

Human salivary

123


Dorn GW 2nd, Matkovich SJ, Eschenbacher WH, Zhang Y. A human 3' miR-499 mutation alters cardiac mRNA targeting and function. Circ Res. 2012 Mar; 110(7): 958-67.

Mouse tissue

122


Ho NK, Ossa JC, Silphaduang U, Johnson R, Johnson-Henry KC, Sherman PM. Enterohemorrhagic Escherichia coli O157:H7 Shiga toxins inhibit gamma interferon-mediated cellular activation. Infect Immun. 2012 Jul; 80(7): 2307-15.

Bacteria

121


Wang X, Mandal AK, Saito H, Pulliam JF, Lee EY, Ke ZJ, Lu J, Ding S, Li L, Shelton BJ, Tucker T, Evers BM, Zhang Z, Shi X. Arsenic and chromium in drinking water promote tumorigenesis in a mouse colitis-associated colorectal cancer model and the potential mechanism is ROS-mediated Wnt/β-catenin signaling pathway. Toxicol Appl Pharmacol. 2012 Jul; 262(1): 11-21.

Mouse tissue

120


Lakshmanan J, Seelan RS, Thangavel M, Vadnal RE, Janckila AJ, Casanova MF, Parthasarathy LK, Parthasarathy RN. Proteomic Analysis of Rat Prefrontal Cortex after Chronic Lithium Treatment. J Proteomics Bioinform. 2012 Jan; 5: 140-146.

Rat tissue

119


Banerjee HN, Mahaffey K, Riddick E, Banerjee A, Bhowmik N, Patra M. Search for a diagnostic/prognostic biomarker for the brain cancer glioblastoma multiforme by 2D-DIGE-MS technique. Mol Cell Biochem. 2012 Aug; 367(1-2): 59-63.

Human biopsy

118


Kuzembayeva M, Chiu YF, Sugden B. Comparing proteomics and RISC immunoprecipitations to identify targets of Epstein-Barr viral miRNAs. PLoS One. 2012 Oct; 7(10): e47409.

Virus

117


Singh SV, Kim SH, Sehrawat A, Arlotti JA, Hahm ER, Sakao K, Beumer JH, Jankowitz RC, Chandra-Kuntal K, Lee J, Powolny AA, Dhir R. Biomarkers of phenethyl isothiocyanate-mediated mammary cancer chemoprevention in a clinically relevant mouse model. J Natl Cancer Inst. 2012 Aug; 104(16): 1228-39.

Mouse plasma

116


Ahmed A, Gaadhe K, Sharma GP, Kumar N, Neculai M, Hui R, Mohanty D, Sharma P. Novel insights into the regulation of malarial calcium-dependent protein kinase 1. FASEB J. 2012 Aug; 26(8): 3212-21.

Parasite

115


Nowak G, Bakajsova D. Protein kinase C-α activation promotes recovery of mitochondrial function and cell survival following oxidant injury in renal cells. Am J Physiol Renal Physiol. 2012 Aug; 303(4): F515-26.

Rabbit tissue

114


Matkovich SJ, Hu Y, Eschenbacher WH, Dorn LE, Dorn GW 2nd. Direct and indirect involvement of microRNA-499 in clinical and experimental cardiomyopathy. Circ Res. 2012 Aug; 111(5): 521-31.

Mouse heart tissue

113


Xiao D, Ohlendorf J, Chen Y, Taylor DD, Rai SN, Waigel S, Zacharias W, Hao H, McMasters KM. Identifying mRNA, microRNA and protein profiles of melanoma exosomes. PLoS One. 2012 Oct; 7(10): e46874.

Human cell line

112


Hesabi B, Danziger RS, Kotlo KU. Heterogeneous nuclear ribonucleoprotein A1 is a novel cellular target of atrial natriuretic peptide signaling in renal epithelial cells. Cell Signal. 2012 May; 24(5): 1100-8.

Human cell line

111


Martinez-Outschoorn UE, Lin Z, Whitaker-Menezes D, Howell A, Sotgia F, Lisanti MP. Ketone body utilization drives tumor growth and metastasis. Cell Cycle. 2012 Nov; 11(21): 3964-71.

Mouse tissue

110


Grillon JM, Johnson KR, Kotlo K, Danziger RS. Non-histone lysine acetylated proteins in heart failure. Biophys Acta. 2012 Apr; 1822(4): 607-14.

Rat tissue

109


Xiao D, Ohlendorf J, Chen Y, Taylor DD, Rai SN, Waigel S, Zacharias W, Hao H, McMasters KM. Identifying mRNA, microRNA and protein profiles of melanoma exosomes. PLoS One. 2012 Oct; 7(10): e46874.

Cell line

108


MKuzembayeva M, Chiu YF, Sugden B. Comparing proteomics and RISC immunoprecipitations to identify targets of Epstein-Barr viral miRNAs. PLoS One. 2012 Oct; 7(10): e47409.

Cell line

107


Govindaraju A, Dogan S, Rodriguez-Osorio N, Grant K, Kaya A, Memili E. Delivering value from sperm proteomics for fertility. Cell Tissue Res. 2012 Sep; 349(3): 783-93.

Cow sperm cells

106


Martinez-Outschoorn UE, Lin Z, Whitaker-Menezes D, Howell A, Lisanti MP, Sotgia F. Ketone bodies and two-compartment tumor metabolism: stromal ketone production fuels mitochondrial biogenesis in epithelial cancer cells. Cell Cycle. 2012 Nov; 11(21): 3956-63.

Human cell line

105


Tang H, Lee M, Sharpe O, Salamone L, Noonan EJ, Hoang CD, Levine S, Robinson WH, Shrager JB. Oxidative stress-responsive microRNA-320 regulates glycolysis in diverse biological systems. FASEB J. 2012 Nov; 26(11): 4710-21.

Mouse tissue

104


Martinez-Outschoorn UE, Sotgia F, Lisanti MP. Power surge: supporting cells "fuel" cancer cell mitochondria. Cell Metab. 2012 Jan; 15(1): 4-5.

Virus

103


Li G, Cai W, Hussein A, Wannemuehler YM, Logue CM, Nolan LK. Proteome response of an extraintestinal pathogenic Escherichia coli strain with zoonotic potential to human and chicken sera. J Proteomics. 2012 Aug; 75(15): 4853-62.

E. coli cells

102


Diaz F, Garcia S, Padgett KR, Moraes CT. A defect in the mitochondrial complex III, but not complex IV, triggers early ROS-dependent damage in defined brain regions. Hum Mol Genet. 2012 Dec; 21(23): 5066-77.

Mouse brain tissue

101


Elder GA, Dorr NP, De Gasperi R, Gama Sosa MA, Shaughness MC, Maudlin-Jeronimo E, Hall AA, McCarron RM, Ahlers ST. Blast exposure induces post-traumatic stress disorder-related traits in a rat model of mild traumatic brain injury. J Neurotrauma. 2012 Nov; 29(16): 2564-75.

Rat brain tissue

100


Kotlo K, Johnson KR, Grillon JM, Geenen DL, deTombe P, Danziger RS. Phosphoprotein abundance changes in hypertensive cardiac remodeling. J Proteomics. 2012 Dec; 77: 1-13.

Rat heart tissue

099


Liu ZL, Weber SA, Cotta MA. Isolation and Characterization of a β-Glucosidase from a Clavispora Strain with Potential Applications in Bioethanol Production from Cellulosic Materials. BioEnergy Research. 2012 Jul; 6: 65–74).

Clavispora

098


Purushothaman P, McDowell ME, McGuinness J, Salas R, Rumjahn SM, Verma SC. Kaposi's sarcoma-associated herpesvirus-encoded LANA recruits topoisomerase IIβ for latent DNA replication of the terminal repeats. J Virol. 2012 Sep; 86(18): 9983-94.

Virus

097


Ahmed A, Gaadhe K, Sharma GP, Kumar N, Neculai M, Hui R, Mohanty D, Sharma P. Novel insights into the regulation of malarial calcium-dependent protein kinase 1. FASEB J. 2012 Aug; 26(8): 3212-21.

Parasite

096


Curry E, Stoops MA, Roth TL. Non-invasive detection of candidate pregnancy protein biomarkers in the feces of captive polar bears (Ursus maritimus). Theriogenology. 2012 Jul; 78(2): 308-14.

Polar bear fecal

095


Scharf B, Clement CC, Wu XX, Morozova K, Zanolini D, Follenzi A, Larocca JN, Levon K, Sutterwala FS, Rand J, Cobelli N, Purdue E, Hajjar KA, Santambrogio L. Annexin A2 binds to endosomes following organelle destabilization by particulate wear debris. Nat Commun. 2012 Mar; 3: 755.

Mouse bone marrow

094


Pinzón A, Rodriguez-R LM, González A, Bernal A, Restrepo S. Targeted metabolic reconstruction: a novel approach for the characterization of plant-pathogen interactions. Brief Bioinform. 2011 Mar; 12(2): 151-62.

Plant tissue

093


Ramadoss J, Magness RR. 2-D DIGE uterine endothelial proteomic profile for maternal chronic binge-like alcohol exposure. J Proteomics. 2011 Nov; 74(12): 2986-94.

Bovine tissue

092


Frank AK, Pietsch EC, Dumont P, Tao J, Murphy ME. Wild-type and mutant p53 proteins interact with mitochondrial caspase-3. Cancer Biol Ther. 2011 Apr; 11(8): 740-5.

Human cell line

091


Pimkina J, Murphy ME. Interaction of the ARF tumor suppressor with cytosolic HSP70 contributes to its autophagy function. Cancer Biol Ther. 2011 Sep; 12(6): 503-9.

Human cell line

090


Ramsey AJ, Milenkovic M, Oliveira AF, Escobedo-Lozoya Y, Seshadri S, Salahpour A, Sawa A, Yasuda R, Caron MG. Impaired NMDA receptor transmission alters striatal synapses and DISC1 protein in an age-dependent manner. PNAS USA. 2011 Apr 5; 108(14): 5795-800.

Mouse tissue

089


Huang Z, Hoffmann FW, Norton RL, Hashimoto AC, Hoffmann PR. Selenoprotein K is a novel target of m-calpain, and cleavage is regulated by Toll-like receptor-induced calpastatin in macrophages. J Biol Chem. 2011 Oct; 286(40): 34830-8.

Cells

088


Zhang HH, Wang YP, Chen DB. Analysis of nitroso-proteomes in normotensive and severe preeclamptic human placentas. Biol Reprod. 2011 84(5): 966-75.

Human placentas

087


Kassa RM, Kasensa NL, Monterroso VH, Kayton RJ, Klimek JE, David LL, Lunganza KR, Kayembe KT, Bentivoglio M, Juliano SL, Tshala-Katumbay DD. On the biomarkers and mechanisms of konzo, a distinct upper motor neuron disease associated with food (cassava) cyanogenic exposure. Food Chem Toxicol. 2011 Mar; 49(3): 571-8.

Neuron cells

086


Froman DP, Feltmann AJ, Pendarvis K, Cooksey AM, Burgess SC, Rhoads DD. Physiology and endocrinology symposium: a proteome-based model for sperm mobility phenotype. J Anim Sci. 2011 . May; 89(5): 1330-7.

Sperm cells

085


Hill D, Coss C, Dubey JP, Wroblewski K, Sautter M, Hosten T, Muñoz-Zanzi C, Mui E, Withers S, Boyer K, Hermes G, Coyne J, Jagdis F, Burnett A, McLeod P, Morton H, Robinson D, McLeod R. Identification of a sporozoite-specific antigen from Toxoplasma gondii. J Parasitol. 2011 Apr; 97(2): 328-37.

Toxoplasma gondii

084


Antunes RF, Brandão C, Maia M, Arosa FA. Red blood cells release factors with growth and survival bioactivities for normal and leukemic T cells. Immunol Cell Biol. 2011 Jan; 89(1): 111-21.

Red blood cells

083


Huang NF, Kurpinski K, Fang Q, Lee RJ, Li S. Proteomic identification of biomarkers of vascular injury. Am J Transl Res. 2011 Feb; 3(2): 139-48.

Rat plasma

082


Marshall JL, Huestis DL, Garcia C, Hiromasa Y, Wheeler S, Noh S, Tomich JM, Howard DJ. Comparative proteomics uncovers the signature of natural selection acting on the ejaculate proteomes of two cricket species isolated by postmating, prezygotic phenotypes. Mol Biol Evol. 2011 Jan; 28(1): 423-35.

Cricket

081


Kirpich IA, Gobejishvili LN, Bon Homme M, Waigel S, Cave M, Arteel G, Barve SS, McClain CJ, Deaciuc IV. Integrated hepatic transcriptome and proteome analysis of mice with high-fat diet-induced nonalcoholic fatty liver disease. J Nutr Biochem. 2011 Jan; 22(1): 38-45.

Mouse liver tissue

080


Posokhova E, Song H, Belcastro M, Higgins L, Bigley LR, Michaud NA, Martemyanov KA, Sokolov M. Disruption of the chaperonin containing TCP-1 function affects protein networks essential for rod outer segment morphogenesis and survival. Mol Cell Proteomics. 2011 Jan; 10(1): M110.000570.

Retina

079


Thakkar D, Shervington L, Shervington A. Proteomic studies coupled with RNAi methodologies can shed further light on the downstream effects of telomerase in glioma. Cancer Invest. 2011 Feb; 29(2): 113-22.

Glioma cells

078


Arce-Paredes P, Mora-Escobedo R, Luna-Arias JP, Mendoza-Hernandez G, Rojas-Espinosa O. Heat, Salinity, and Acidity, Commonly Upregulate A1aB1b Proglycinin in Soybean Embryonic Axes. Soybean - Biochemistry, Chemistry and Physiology. 2011 Apr; 402-422.

Soybeans

077


Green KN, Khashwji H, Estrada T, Laferla FM. ST101 induces a novel 17 kDa APP cleavage that precludes Aβ generation in vivo. Ann Neurol. 2011 May; 69(5): 831-44.

Mouse tissue

076


Maldonado R, Wei R, Kachlany SC, Kazi M, Balashova NV. Cytotoxic effects of Kingella kingae outer membrane vesicles on human cells. Microb Pathog. 2011 Jul-Aug; 51(1-2): 22-30.

Human cells

075


Mains LM, Christenson L, Yang B, Sparks AE, Mathur S, Van Voorhis BJ. Identification of apolipoprotein A1 in the human embryonic secretome. Fertil Steril. 2011 Aug; 96(2): 422-427.e2.

Human blastocysts

074


Chae HS, Kim YH. A NELL-1 Binding Protein: Vimentin. J Kor Dent Sci. 2011 Jun; 4(1): 6-13.

C. elegans

073


Saraswathy S, Rao NA. Posttranslational modification of differentially expressed mitochondrial proteins in the retina during early experimental autoimmune uveitis. Mol Vis. 2011 Jul; 17: 1814-21.

Mouse mitochondria

072


Powolny AA, Bommareddy A, Hahm ER, Normolle DP, Beumer JH, Nelson JB, Singh SV. Chemopreventative potential of the cruciferous vegetable constituent phenethyl isothiocyanate in a mouse model of prostate cancer. J Natl Cancer Inst. 2011 Apr; 103(7): 571-84.

Mouse tissue

071


Ji C, Kaplowitz N, Lau MY, Kao E, Petrovic LM, Lee AS. Liver-specific loss of glucose-regulated protein 78 perturbs the unfolded protein response and exacerbates a spectrum of liver diseases in mice. Hepatology. 2011 Jul; 54(1):229-39.

Mouse liver

070


Gong K, Xing D, Li P, Hilgers RH, Hage FG, Oparil S, Chen YF. cGMP inhibits TGF-beta signaling by sequestering Smad3 with cytosolic beta2-tubulin in pulmonary artery smooth muscle cells. Mol Endocrinol. 2011 Oct; 25(10): 1794-803.

Cells

069


Oggé G, Romero R, Lee DC, Gotsch F, Than NG, Lee J, Chaiworapongsa T, Dong Z, Mittal P, Hassan SS, Kim CJ. Chronic chorioamnionitis displays distinct alterations of the amniotic fluid proteome. J Pathol. 2011 Mar; 223(4): 553-65.

Amniotic fluid

068


Wang J, Han X, Saha S, Xu T, Rai R, Zhang F, Wolf YI, Wolfson A, Yates JR 3rd, Kashina A. Arginyltransferase is an ATP-independent self-regulating enzyme that forms distinct functional complexes in vivo. Chem Biol. 2011 Jan; 18(1): 121-30.

Cells

067


Maldonado R, Wei R, Kachlany SC, Kazi M, Balashova NV. Cytotoxic effects of Kingella kingae outer membrane vesicles on human cells. Microb Pathog. 2011 Jul-Aug; 51(1-2): 22-30.

Cells

066


Hopf PS, Ford RS, Zebian N, Merkx-Jacques A, Vijayakumar S, Ratnayake D, Hayworth J, Creuzenet C. Protein Glycosylation in Helicobacter pylori: Beyond the Flagellins? PLoS One. 2011 Sep; 6(9): e25722.

Cells

065


Bryant KG, Camacho J, Jasmin JF, Wang C, Addya S, Casimiro MC, Fortina P, Balasubramaniam S, Knudsen KE, Schwarting R, Lisanti MP, Mercier I. Caveolin-1 overexpression enhances androgen-dependent growth and proliferation in the mouse prostate. Int J Biochem Cell Biol. 2011 Sep; 43(9): 1318-29.

Mouse prostate

064


Boone LR, Lagor WR, Moya Mde L, Niesen MI, Rothblat GH, Ness GC. Thyroid hormone enhances the ability of serum to accept cellular cholesterol via the ABCA1 transporter. Atherosclerosis. 2011 Sep; 218(1): 77-82.

Rat serum

063


Xi L, Zhu SG, Hobbs DC, Kukreja RC. Identification of protein targets underlying dietary nitrate-induced protection against doxorubicin cardiotoxicity. J Cell Mol Med. 2011 Nov; 15(11): 2512-24.

Mouse heart tissue

062


Trimmer C, Sotgia F, Whitaker-Menezes D, Balliet RM, Eaton G, Martinez-Outschoorn UE, Pavlides S, Howell A, Iozzo RV, Pestell RG, Scherer PE, Capozza F, Lisanti MP. Caveolin-1 and mitochondrial SOD2 (MnSOD) function as tumor suppressors in the stromal microenvironment: a new genetically tractable model for human cancer associated fibroblasts. Cancer Biol Ther. 2011 Feb; 11(4): 383-94.

Human cell line

061


Chen Y, Wang D, Guo Z, Zhao J, Wu B, Deng H, Zhou T, Xiang H, Gao F, Yu X, Liao J, Ward T, Xia P, Emenari C, Ding X, Thompson W, Ma K, Zhu J, Aikhionbare F, Dou K, Cheng SY, Yao X. Rho kinase phosphorylation promotes ezrin-mediated metastasis in hepatocellular carcinoma. Cancer Res. 2011 Mar; 71(5): 1721-9.

Human cells

060


Miharada K, Karlsson G, Rehn M, Rörby E, Siva K, Cammenga J, Karlsson S. Cripto regulates hematopoietic stem cells as a hypoxic-niche-related factor through cell surface receptor GRP78. Cell Stem Cell. 2011 Oct; 9(4): 330-44.

Stem cells

059


Castello-Cros R, Bonuccelli G, Molchansky A, Capozza F, Witkiewicz AK, Birbe RC, Howell A, Pestell RG, Whitaker-Menezes D, Sotgia F, Lisanti MP. Matrix remodeling stimulates stromal autophagy, "fueling" cancer cell mitochondrial metabolism and metastasis. Cell Cycle. 2011 Jun; 10(12): 2021-34.

Human cell line

058


Kalupahana NS, Claycombe KJ, Moustaid-Moussa N. (n-3) Fatty acids alleviate adipose tissue inflammation and insulin resistance: mechanistic insights. Adv Nutr. 2011 Jul; 2(4): 304-16.

Mouse tissue

057


Chiavarina B, Whitaker-Menezes D, Migneco G, Martinez-Outschoorn UE, Pavlides S, Howell A, Tanowitz HB, Casimiro MC, Wang C, Pestell RG, Grieshaber P, Caro J, Sotgia F, Lisanti MP. HIF1-alpha functions as a tumor promoter in cancer associated fibroblasts, and as a tumor suppressor in breast cancer cells: Autophagy drives compartment-specific oncogenesis. Cell Cycle. 2010 Sep; 9(17): 3534-51.

Human cell line

056


Bonuccelli G, Whitaker-Menezes D, Castello-Cros R, Pavlides S, Pestell RG, Fatatis A, Witkiewicz AK, Vander Heiden MG, Migneco G, Chiavarina B, Frank PG, Capozza F, Flomenberg N, Martinez-Outschoorn UE, Sotgia F, Lisanti MP. The reverse Warburg effect: glycolysis inhibitors prevent the tumor promoting effects of caveolin-1 deficient cancer associated fibroblasts. Cell Cycle. 2010 May; 9(10): 1960-71.

Human cell line

055


Migneco G, Whitaker-Menezes D, Chiavarina B, Castello-Cros R, Pavlides S, Pestell RG, Fatatis A, Flomenberg N, Tsirigos A, Howell A, Martinez-Outschoorn UE, Sotgia F, Lisanti MP. Glycolytic cancer associated fibroblasts promote breast cancer tumor growth, without a measurable increase in angiogenesis: evidence for stromal-epithelial metabolic coupling. Cell Cycle. 2010 Jun; 9(12): 2412-22.

Human cells

054


Birk E, Har-Zahav A, Manzini CM, Pasmanik-Chor M, Kornreich L, Walsh CA, Noben-Trauth K, Albin A, Simon AJ, Colleaux L, Morad Y, Rainshtein L, Tischfield DJ, Wang P, Magal N, Maya I, Shoshani N, Rechavi G, Gothelf D, Maydan G, Shohat M, Basel-Vanagaite L. SOBP is mutated in syndromic and nonsyndromic intellectual disability and is highly expressed in the brain limbic system. Am J Hum Genet. 2010 Nov; 87(5): 694-700.

Mouse brain

053


Prescott MA, Pastey MK. Identification of Unique Blood and Urine Biomarkers in Influenza Virus and Staphylococcus aureus Co-infection: A Preliminary Study. Biomarker Insights. 2010 Dec; 5: 145-51.

Mouse urine

052


Balestrieri ML, Giovane A, Milone L, Felice F, Fiorito C, Crudele V, Esposito A, Rossiello R, Minucci PB, Farzati B, Servillo L, Napoli C. Modification of the detrimental effect of TNF-α on human endothelial progenitor cells by fasudil and Y27632. J Biochem Mol Toxicol. 2010 Nov-Dec; 24(6): 351-60.

Human endothelial progenitor cells

051


Paczkowski M, Krisher R. Aberrant protein expression is associated with decreased developmental potential in porcine cumulus-oocyte complexes. Mol Reprod Dev. 2010 Jan; 77(1): 51-8.

Porcine cumulus-oocyte complexes

050


Rex EB, Rankin ML, Yang Y, Lu Q, Gerfen CR, Jose PA, Sibley DR. Identification of RanBP 9/10 as interacting partners for protein kinase C (PKC) gamma/delta and the D1 dopamine receptor: regulation of PKC-mediated receptor phosphorylation. Mol Pharmacol. 2010 Jul; 78(1): 69-80.

HEK293T cells

049


Kongara S, Kravchuk O, Teplova I, Lozy F, Schulte J, Moore D, Barnard N, Neumann CA, White E, Karantza V. Autophagy regulates keratin 8 homeostasis in mammary epithelial cells and in breast tumors. Mol Cancer Res. 2010 Jun; 8(6): 873-84.

Mouse mammary epithelial cells

048


Zhang HH, Feng L, Livnat I, Hoh JK, Shim JY, Liao WX, Chen DB. Estradiol-17beta stimulates specific receptor and endogenous nitric oxide-dependent dynamic endothelial protein S-nitrosylation: analysis of endothelial nitrosyl-proteome. Endocrinology. 2010 Aug; 151(8): 3874-87.


Human endothelial cell

047


Clement CC, Cannizzo ES, Nastke MD, Sahu R, Olszewski W, Miller NE, Stern LJ, Santambrogio L. An expanded self-antigen peptidome is carried by the human lymph as compared to the plasma. PLoS One. 2010 Mar; 5(3): e9863.


Human plasma and lymph

046


Zhang L, Xiao H, Karlan S, Zhou H, Gross J, Elashoff D, Akin D, Yan X, Chia D, Karlan B, Wong DT. Discovery and preclinical validation of salivary transcriptomic and proteomic biomarkers for the non-invasive detection of breast cancer. PLoS One. 2010 Dec; 5(12): e15573.

Saliva

045


Palanisamy V, Sharma S, Deshpande A, Zhou H, Gimzewski J, Wong DT. Nanostructural and transcriptomic analyses of human saliva derived exosomes. PLoS One. 2010 Jan; 5(1): e8577.

Human oral keratinocytes

044


Luo WI, Dizin E, Yoon T, Cowan JA. Kinetic and structural characterization of human mortalin. Protein Expr Purif. Protein Expr Purif. 2010 Jul; 72(1): 75-81.

Purified recombinant protein (mass spec)

043


Doukhanine E, Gavino C, Haines JD, Almazan G, Richard S. The QKI-6 RNA binding protein regulates actin-interacting protein-1 mRNA stability during oligodendrocyte differentiation. Mol Biol Cell. 2010 Sep; 21(17): 3029-40.


Human glioblastoma cells

042


Villar M, Ayllón N, Busby AT, Galindo RC, Blouin EF, Kocan KM, Bonzón-Kulichenko E, Zivkovic Z, Almazán C, Torina A, Vázquez J, de la Fuente J. Expression of Heat Shock and Other Stress Response Proteins in Ticks and Cultured Tick Cells in Response to Anaplasma spp. Infection and Heat Shock. Int J Proteomics. 2010 Sep; 2010: 657261.

Tick cells

041


Loheswaran G, Stanojcic M, Xu L, Sakic B. Autoimmunity as a principal pathogenic factor in the refined model of neuropsychiatric lupus. Clin Exp Neuroimmunol. 2010 Sep; 1(3): 141-152.

Mouse serum and cerebrospinal fluid

040


Kang MY, Zhang Y, Matkovich SJ, Diwan A, Chishti AH, Dorn GW 2nd. Receptor-independent cardiac protein kinase Calpha activation by calpain-mediated truncation of regulatory domains. Circ Res. 2010 Oct; 107(7): 903-12.


Mouse ventricular cells

039


Martínez-Pastor M, Proft M, Pascual-Ahuir A. Adaptive changes of the yeast mitochondrial proteome in response to salt stress. OMICS. 2010 Oct; 14(5): 541-52.


Yeast mitochondrial cells

038


Encinas P, Rodriguez-Milla MA, Novoa B, Estepa A, Figueras A, Coll J. Zebrafish fin immune responses during high mortality infections with viral haemorrhagic septicemia rhabdovirus. A proteomic and transcriptomic approach. BMC Genomics. 2010 Sep; 11: 518.

Zebrafish fins

037


Mellgren RL. A plasma membrane wound proteome: reversible externalization of intracellular proteins following reparable mechanical damage. J Biol Chem. 2010 Nov; 285(47): 36597-607.

Wound-associated proteins (mass spec)

036


Zhou Q, Snider NT, Liao J, Li DH, Hong A, Ku NO, Cartwright CA, Omary MB. Characterization of in vivo keratin 19 phosphorylation on tyrosine-391. PLoS One. 2010 Oct; 5(10): e13538.

Keratin proteins
(mass spec)

035


Kalupahana NS, Claycombe K, Newman SJ, Stewart T, Siriwardhana N, Matthan N, Lichtenstein AH, Moustaid-Moussa N. Eicosapentaenoic acid prevents and reverses insulin resistance in high-fat diet-induced obese mice via modulation of adipose tissue inflammation. J Nutr. 2010 Nov; 140(11): 1915-22.

Cultured adipocytes

034


Lamore SD, Qiao S, Horn D, Wondrak GT. Proteomic identification of cathepsin B and nucleophosmin as novel UVA-targets in human skin fibroblasts. Photochem Photobiol. 2010 Nov-Dec; 86(6): 1307-17.

Human dermal fibroblasts

033


Petersen PS, Woldbye DP, Madsen AN, Egerod KL, Jin C, Lang M, Rasmussen M, Beck-Sickinger AG, Holst B. In vivo characterization of high Basal signaling from the ghrelin receptor. Endocrinology. 2009 Nov; 150(11): 4920-30.

Cells

032


Martin JN, Bair TB, Bode N, Dauer WT, Gonzalez-Alegre P. Transcriptional and proteomic profiling in a cellular model of DYT1 dystonia. Neuroscience. 2009 Dec; 164(2): 563-72.

Human cell line

031


Mathew R, Karp CM, Beaudoin B, Vuong N, Chen G, Chen HY, Bray K, Reddy A, Bhanot G, Gelinas C, Dipaola RS, Karantza-Wadsworth V, White E. Autophagy suppresses tumorigenesis through elimination of p62. Cell. 2009 Jun 12; 137(6): 1062-75.

Baby mouse kidney cells

030


Alvares K, Dixit SN, Lux E, Veis A. Echinoderm phosphorylated matrix proteins UTMP16 and UTMP19 have different functions in sea urchin tooth mineralization. J Biol Chem. 2009 Sep; 284(38): 26149-60.

Sea urchin

029


Gupta S, Varghese M, Shareef MM, Ahmed MM. Human Prostate Cancer Cells Secrete Neuro-Protective Factors in Response to Cryotherapy. Mol Cell Pharmacol. 2009 Jan; 1(4): 200-206.

Human prostate cancer cells

028


Kurpinski K, Chu J, Wang D, Li S. Proteomic Profiling of Mesenchymal Stem Cell Responses to Mechanical Strain and TGF-beta1. Cell Mol Bioeng. 2009 Dec; 2(4): 606-614.

Human mesenchymal stem cells

027


Pimkina J, Humbey O, Zilfou JT, Jarnik M, Murphy ME. ARF induces autophagy by virtue of interaction with Bcl-xl. J Biol Chem. 2009 Jan; 284(5): 2803-10.

Immunoprecipitates from purified mitochondria

026


Fong LG, Vickers TA, Farber EA, Choi C, Yun UJ, Hu Y, Yang SH, Coffinier C, Lee R, Yin L, Davies BS, Andres DA, Spielmann HP, Bennett CF, Young SG. Activating the synthesis of progerin, the mutant prelamin A in Hutchinson-Gilford progeria syndrome, with antisense oligonucleotides. Hum Mol Genet. 2009 Jul; 18(13): 2462-71.

Human fibroblasts

025


Petersen PS, Woldbye DP, Madsen AN, Egerod KL, Jin C, Lang M, Rasmussen M, Beck-Sickinger AG, Holst B. In vivo characterization of high Basal signaling from the ghrelin receptor. Endocrinology. 2009 Nov; 150(11): 4920-30.

Peptide characterization (mass spec)

024


Tshala-Katumbay D, Monterroso V, Kayton R, Lasarev M, Sabri M, Spencer P. Probing mechanisms of axonopathy. Part II: Protein targets of 2,5-hexanedione, the neurotoxic metabolite of the aliphatic solvent n-hexane. Toxicol Sci. 2009 Feb; 107(2): 482-9.

Rat spinal cords

023


Pileggi A, Ribeiro MM, Hogan AR, Molano RD, Cobianchi L, Ichii H, Embury J, Inverardi L, Fornoni A, Ricordi C, Pastori RL. Impact of pancreatic cold preservation on rat islet recovery and function. Transplantation. 2009 May; 87(10): 1442-50.

Rat pancreatic tissue

022


Shi T, Moulton VR, Lapchak PH, Deng GM, Dalle Lucca JJ, Tsokos GC. Ischemia-mediated aggregation of the actin cytoskeleton is one of the major initial events resulting in ischemia-reperfusion injury. Am J Physiol Gastrointest Liver Physiol. 2009 Feb; 296(2): G339-47.

Mouse jejunal segments

021


Caplan JL, Zhu X, Mamillapalli P, Marathe R, Anandalakshmi R, Dinesh-Kumar SP. Induced ER chaperones regulate a receptor-like kinase to mediate antiviral innate immune response in plants. Cell Host Microbe. 2009 Nov; 6(5): 457-69.

Plant cells

020


Kang X, Chen W, Kim RH, Kang MK, Park NH. Regulation of the hTERT promoter activity by MSH2, the hnRNPs K and D, and GRHL2 in human oral squamous cell carcinoma cells. Oncogene. 2009 Jan; 28(4): 565-74.

IP samples

019


Tector M, Khatri BO, Kozinski K, Dennert K, Oaks MK. Biochemical analysis of CTLA-4 immunoreactive material from human blood. BMC Immunol. 2009 Sep; 10: 51.

Human plasma

018


Averette KM, Pratt MR, Yang Y, Bassilian S, Whitelegge JP, Loo JA, Muir TW, Bradley KA. Anthrax lethal toxin induced lysosomal membrane permeabilization and cytosolic cathepsin release is Nlrp1b/Nalp1b-dependent. PLoS One. 2009 Nov; 4(11): e7913.

Macrophage cells

017


Saraswathy S, Rao NA. Mitochondrial proteomics in experimental autoimmune uveitis oxidative stress. Ophthalmol Vis Sci. 2009 Dec; 50(12): 5559-66.

Mouse retinal mitochondria

016


Hogan AR, Doni M, Ribeiro MM, Molano RD, Cobianchi L, Molina J, Zahr E, Ricordi C, Pastori RL, Pileggi A. Ischemic preconditioning improves islet recovery after pancreas cold preservation. Transplant Proc. 2009 Jan-Feb; 41(1): 354-5.

Mouse islet cells

015


Pileggi A, Ribeiro MM, Hogan AR, Molano RD, Embury JE, Ichii H, Cobianchi L, Fornoni A, Ricordi C, Pastori RL. Effects of pancreas cold ischemia on islet function and quality. Transplant Proc. 2009 Jun; 41(5): 1808-9.

Mouse islet cells

014


Tao GZ, Looi KS, Toivola DM, Strnad P, Zhou Q, Liao J, Wei Y, Habtezion A, Omary MB. Keratins modulate the shape and function of hepatocyte mitochondria: a mechanism for protection from apoptosis. J Cell Sci. 2009 Nov; 122(Pt 21): 3851-5.

Mouse liver mitochondria

013


Balestrieri ML, Rienzo M, Felice F, Rossiello R, Grimaldi V, Milone L, Casamassimi A, Servillo L, Farzati B, Giovane A, Napoli C. High glucose downregulates endothelial progenitor cell number via SIRT1. Biochim Biophys Acta. 2008 Jun; 1784(6): 936-45.

Human endothelial progenitor cells

012


Corena-McLeod Mdel P, Oliveros A, Charlesworth C, Madden B, Liang YQ, Boules M, Shaw A, Williams K, Richelson E. Paliperidone as a mood stabilizer: a pre-frontal cortex synaptoneurosomal proteomics comparison with lithium and valproic acid after chronic treatment reveals similarities in protein expression. Brain Res. 2008 Oct; 1233: 8-19.

Rat brain tissue

011


Ho TD, Davis BM, Ritchie JM, Waldor MK. Type 2 secretion promotes enterohemorrhagic Escherichia coli adherence and intestinal colonization. Infect Immun. 2008 May; 76(5): 1858-65.

Enterohemorrhagic E. coli

010


Moore JC, Fu J, Chan YC, Lin D, Tran H, Tse HF, Li RA. Distinct cardiogenic preferences of two human embryonic stem cell (hESC) lines are imprinted in their proteomes in the pluripotent state. Biochem Biophys Res Commun. 2008 Aug; 372(4): 553-8.

Human embryonic stem cells

009


Siboo IR, Chaffin DO, Rubens CE, Sullam PM. Characterization of the accessory Sec system of Staphylococcus aureus. J Bacteriol. 2008 Sep; 190(18): 6188-96.

Culture media

008


Strnad P, Tao GZ, So P, Lau K, Schilling J, Wei Y, Liao J, Omary MB. "Toxic memory" via chaperone modification is a potential mechanism for rapid Mallory-Denk body reinduction. Hepatology. 2008 Sep; 48(3): 931-42.

Mouse liver homogenates

007


Tshala-Katumbay D, Monterroso V, Kayton R, Lasarev M, Sabri M, Spencer P. Probing mechanisms of axonopathy. Part I: Protein targets of 1,2-diacetylbenzene, the neurotoxic metabolite of aromatic solvent 1,2-diethylbenzene. Toxicol Sci. 2008 Sep; 105(1): 134-41.

Rat spinal cords

006


de la Fuente J, Blouin EF, Manzano-Roman R, Naranjo V, Almazán C, Pérez de la Lastra JM, Zivkovic Z, Jongejan F, Kocan KM. Functional genomic studies of tick cells in response to infection with the cattle pathogen, Anaplasma marginale. Genomics. 2007 Dec; 90(6): 712-22.

Tick cells

005


Saba H, Batinic-Haberle I, Munusamy S, Mitchell T, Lichti C, Megyesi J, MacMillan-Crow LA. Manganese porphyrin reduces renal injury and mitochondrial damage during ischemia/reperfusion. Free Radic Biol Med. 2007 May; 42(10): 1571-8.

Rat renal tissue

004


Wong CC, Xu T, Rai R, Bailey AO, Yates JR 3rd, Wolf YI, Zebroski H, Kashina A. Global analysis of posttranslational protein arginylation. PLoS Biol. 2007 Oct; 5(10): e258.

Mouse fibroblasts

003


Zhu S, Si ML, Wu H, Mo YY. MicroRNA-21 targets the tumor suppressor gene tropomyosin 1 (TPM1). J Biol Chem. 2007 May; 282(19): 14328-36.

Mouse tumor cells

002


Shen Y, Li L, Liao J. Assay: Proteomics Technology for Plasma and Serum. Genetic Engineering News. 2006 May; 26(10).

N/A

001


Amme S, Matros A, Schlesier B, Mock HP. Proteome analysis of cold stress response in Arabidopsis thaliana using DIGE-technology. J Exp Bot. 2006 Mar; 57(7): 1537-46.

Arabidopsis thaliana


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